PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0322s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 538aa    MW: 58780.3 Da    PI: 8.8071
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0322s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY105.52.8e-33244300259
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             +DgynWrKYGqK++kgse+prsYY+Ct+ +Cpvkkkvers+ d++++ei+Y+geHnh+
  SapurV1A.0322s0160.1.p 244 HDGYNWRKYGQKPIKGSEYPRSYYKCTHVNCPVKKKVERSS-DGQITEIIYKGEHNHD 300
                             7****************************************.***************7 PP
2WRKY107.18.6e-34423481159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+a dpk+v++tYeg+Hnh+
  SapurV1A.0322s0160.1.p 423 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERAAADPKAVITTYEGKHNHD 481
                             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081124.983238302IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.3E-29240302IPR003657WRKY domain
SuperFamilySSF1182902.35E-26242302IPR003657WRKY domain
SMARTSM007741.7E-37243301IPR003657WRKY domain
PfamPF031067.3E-26245300IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-37408483IPR003657WRKY domain
SuperFamilySSF1182901.44E-29415483IPR003657WRKY domain
PROSITE profilePS5081138.733418483IPR003657WRKY domain
SMARTSM007744.5E-40423482IPR003657WRKY domain
PfamPF031062.1E-26424481IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MAEKQQNLTT TATAPGKPTI TLPPRPSMET FFTGGLSPGP MTLVSSFFAD TPYPESDYRS  60
FSQLLAGAMA SPIARPAFFT DHPIPNNNTN TATATSSKDD AFYSNSNLGF KQSRPMNLVV  120
ARSPLFTVPP GLSPSGLLNS PGFFSPQSPF GMSHQQALAQ VTAHAALLAQ SQMHMHSQYQ  180
TSSATAPTEL LTRHPSLNPG EALQQQQQMP HSTSDTKNSM AELAEFSHSE RKYQPPAAVD  240
KPTHDGYNWR KYGQKPIKGS EYPRSYYKCT HVNCPVKKKV ERSSDGQITE IIYKGEHNHD  300
PPQSNKRSKD GNDSNGSIRS QSKPEDGSQA QAGTAIKLTE TLPAHSVTGT DQESTKANPS  360
EPPGSSDSEE AGDAAVPEEE RGDDEPNPKR RQVNVVTSEA TLPHKTVTEP KIIVQTRSEV  420
DLLDDGYRWR KYGQKVVKGN PHPRSYYKCT SAGCNVRKHV ERAAADPKAV ITTYEGKHNH  480
DVPAARNCSH NTANTSSSQV KRQKVVTENH PLLKGMEFGN NDQRPVLLRL KEEKIAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-40245484878Probable WRKY transcription factor 4
2lex_A3e-40245484878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00260DAPTransfer from AT2G03340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0322s0160.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035813.10.0PREDICTED: probable WRKY transcription factor 3
SwissprotQ9ZQ701e-144WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2K1X5D20.0A0A2K1X5D2_POPTR; Uncharacterized protein
STRINGPOPTR_0004s12000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-141WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]