PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0315s0090.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 298aa MW: 31816.1 Da PI: 7.3751 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 95.7 | 4.9e-30 | 4 | 105 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C+++C ++p++ +++q++++ +++k++G++ +++l++a pe+ r+++++sl+yeA+ r+ +P+yG+vg++++ SapurV1A.0315s0090.1.p 4 SCNGCRVLRKGCSENCSIRPCLqwiksAESQANATVFLAKFYGRAGLMNLINAGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLMWS 90 6*********************9999777889******************************************************* PP DUF260 83 lqqqleqlkaelall 97 +++ l+q+++e++l SapurV1A.0315s0090.1.p 91 GSWPLCQAAVEAVLK 105 *********999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038155 | 8.7E-95 | 1 | 296 | IPR017414 | LOB domain-containing protein 10/36/41 |
PROSITE profile | PS50891 | 16.615 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 8.7E-24 | 4 | 102 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS AESQANATVF LAKFYGRAGL MNLINAGPEH 60 LRPAIFRSLL YEACGRIVNP IYGSVGLMWS GSWPLCQAAV EAVLKGVPIT PINSEIAANA 120 QGPPLKAYDI RHVSKDENSA ASNDANRVRS RCRVGRVVKP KASKPACGDN GLESIVVDMS 180 ATRDGLTRST SHDSSVSHQS GLAMVDGESK ETDESVVSVE TAEESLLFRA EPESKSDLAT 240 HDASSSEIAG LGLNLTLGLE PVSRAHHVVP VKKRRIEACG SSDIDTCKME LGLDYSA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0315s0090.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011035061.1 | 0.0 | PREDICTED: LOB domain-containing protein 41 | ||||
Swissprot | Q9M886 | 1e-105 | LBD41_ARATH; LOB domain-containing protein 41 | ||||
TrEMBL | A0A2K2ASG4 | 0.0 | A0A2K2ASG4_POPTR; Uncharacterized protein | ||||
STRING | cassava4.1_012667m | 1e-168 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1546 | 34 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02550.1 | 2e-85 | LOB domain-containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0315s0090.1.p |