PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0315s0050.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 184aa MW: 21472.5 Da PI: 10.2476 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.2 | 1.1e-11 | 62 | 177 | 2 | 98 |
EEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTH.HHH CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltled.esgrsWevkliyrkksgryvltkGW.keF 68 +k+++psd ++++rl +p + +e+h ++++++ ++++ d +g ++ ++ + +s++y++ +GW k+F SapurV1A.0315s0050.1.p 62 KKKMKPSDLGNLCRLLVPSDLVEKHilpflntaqanqvagvvsRQETNRGLKVRVWDvNTGSMHRLVFKRWSTSRSYIFNDGWtKDF 148 699*************************998886666655554333345555555554444444444455*************557* PP HHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS B3 69 vkangLkegDfvvFkldgr.sefelvvkvfr 98 vk +L egD + ++ d++ +f +++v++ SapurV1A.0315s0050.1.p 149 VKRRNLAEGDEIGIYWDKDqCRF--TFSVLS 177 ***************98876666..666655 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.4E-19 | 57 | 175 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.47E-18 | 58 | 176 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.64E-16 | 59 | 177 | No hit | No description |
SMART | SM01019 | 2.2E-5 | 61 | 179 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-8 | 63 | 177 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 184 aa Download sequence Send to blast |
MEKQGWNQSR NKESEEEMER SRVAFNLRRM RTSYTMGDLL EERSRGVSTE LSLSHYDPFM 60 IKKKMKPSDL GNLCRLLVPS DLVEKHILPF LNTAQANQVA GVVSRQETNR GLKVRVWDVN 120 TGSMHRLVFK RWSTSRSYIF NDGWTKDFVK RRNLAEGDEI GIYWDKDQCR FTFSVLSRAC 180 LVR* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0315s0050.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011035168.1 | 3e-99 | PREDICTED: B3 domain-containing protein At2g33720-like | ||||
TrEMBL | B9H2Z8 | 3e-97 | B9H2Z8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s09870.1 | 5e-98 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF579 | 12 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G33720.1 | 7e-29 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0315s0050.1.p |