PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0314s0280.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CO-like
Protein Properties Length: 352aa    MW: 37713.8 Da    PI: 5.6775
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0314s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.82.5e-09448442
                zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                            + C+ +++  ++lfC+ ++ +lC +C +++H        H +vp+
  SapurV1A.0314s0280.1.p  4 KLCDSCKSATATLFCRADSAFLCISCDSKIHAAnklasrHARVPV 48
                            58*****************************66778888888775 PP
2zf-B_box30.66.7e-104691342
                zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                             ++C+ +e+ ++++ C+ +   lC +C   +H+       H++vp+
  SapurV1A.0314s0280.1.p 46 VPVCEVCEQAPAHFTCKADAAALCVTCDRDIHSAnplasrHERVPI 91
                            689*****************************66999999*99997 PP
3CCT70.34.7e-24288331144
                     CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                             Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  SapurV1A.0314s0280.1.p 288 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 331
                             9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003367.1E-14148IPR000315B-box-type zinc finger
PROSITE profilePS5011911.69148IPR000315B-box-type zinc finger
PfamPF006435.3E-7448IPR000315B-box-type zinc finger
CDDcd000211.04E-9548No hitNo description
PROSITE profilePS5011911.0074491IPR000315B-box-type zinc finger
PfamPF006432.9E-84691IPR000315B-box-type zinc finger
CDDcd000218.38E-104791No hitNo description
SMARTSM003361.6E-114991IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787288330IPR010402CCT domain
PfamPF062035.3E-18288330IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MASKLCDSCK SATATLFCRA DSAFLCISCD SKIHAANKLA SRHARVPVCE VCEQAPAHFT  60
CKADAAALCV TCDRDIHSAN PLASRHERVP ITPFFDSSST AHGGGTAVNL LEDRYFDEVV  120
GGGGGGDVSR EEAEAESWLL PNPGGGTTKG MDGMDLNTGQ FVFGSEMDPY LDLDPYVDPK  180
VEVHEQNSSG TTDGVVPVQS NKLGFQVPAL VNDNCSFELD FSTGSKSFGG GYGYNSSLSQ  240
SVSSSSLDVG VVPDGSTLTD ISNSYSSRSV SNGIESANQT VQLSAVDREA RVLRYREKRK  300
NRKFEKTIRY ASRKAYAETR PRIKGRFAKR TDAEVEVDRS SLYGFGVVPS F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0314s0280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485090.0EF148509.1 Populus trichocarpa x Populus deltoides clone WS0131_O05 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324936.10.0zinc finger protein CONSTANS-LIKE 4
SwissprotQ940T91e-130COL4_ARATH; Zinc finger protein CONSTANS-LIKE 4
TrEMBLA9PJC40.0A9PJC4_9ROSI; Uncharacterized protein
STRINGPOPTR_0018s03110.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24930.11e-112CONSTANS-like 4