PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0312s0260.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

GRAS

Protein Properties

Length: 319aa MW: 35552.1 Da PI: 4.5463

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0312s0260.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	40.4	4.4e-13	42	128	2	90
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 ++lL++cA a++++d +laq++++ l++ as gdp+qRl++ f++AL +r ++ ++ + + + +++++s + l +++++ SapurV1A.0312s0260.2.p 42 EKLLIHCASALEQNDGTLAQQVMWVLNNVASLVGDPNQRLTSWFLRALISRASKVCPAATDFDGSGTIRRRQMSVT--ELAVYVDLI 126 689**************************************************98777766554444443332222..222366666 PP GRAS 89 Pi 90 P+ SapurV1A.0312s0260.2.p 127 PW 128 66 PP
2	GRAS	114.7	1.2e-35	130	311	198	373
GRAS 198 p.gEalaVnlvlqlhrll......desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277 + +Eal++n++ l +l d ++++s rd++L++vk l+P ++vvv++++d+ ++s+ r++ +++y + fd+le+ lp+ SapurV1A.0312s0260.2.p 130 RdDEALVINCQNWLRYLSntdqkgDVVQDSSSLRDAFLRTVKFLNPCILVVVDEDSDLRAPSLSSRITACFNYLWIPFDALETFLPK 216 349******999999844444333334445899************************************************ PP GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgW 362 +s +r+ +E +g++i+n+++ eg +r+er e+ + +r+++aGF++vp+ e++ ++++ll++++ ++ ++ ee++ +vl+W SapurV1A.0312s0260.2.p 217 DSTQRVEYESD-IGQKIENIISFEGLQRIERLESGIEVAQRMKNAGFSSVPFCEDTIGEVRSLLEEHAsGW--GMKrEEDHMVVLTW 300 *******.****************************************************555..55525566778* PP GRAS 363 kdrpLvsvSaW 373 k+++ v+++aW SapurV1A.0312s0260.2.p 301 KGHNSVFATAW 311 *********** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.56	1	292	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-10	42	128	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.2E-33	130	311	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MKTELRGSST TSISLQNPSL FNDPDESSLK GCLGSLDGAC IEKLLIHCAS ALEQNDGTLA 60 QQVMWVLNNV ASLVGDPNQR LTSWFLRALI SRASKVCPAA TDFDGSGTIR RRQMSVTELA 120 VYVDLIPWHR DDEALVINCQ NWLRYLSNTD QKGDVVQDSS SLRDAFLRTV KFLNPCILVV 180 VDEDSDLRAP SLSSRITACF NYLWIPFDAL ETFLPKDSTQ RVEYESDIGQ KIENIISFEG 240 LQRIERLESG IEVAQRMKNA GFSSVPFCED TIGEVRSLLE EHASGWGMKR EEDHMVVLTW 300 KGHNSVFATA WVPGDLQD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_B	1e-15	130	313	238	420	Protein SHORT-ROOT
5b3h_E	1e-15	130	313	238	420	Protein SHORT-ROOT
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0312s0260.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006405.1	1e-117	PREDICTED: scarecrow-like protein 32
TrEMBL	A0A396JBF4	1e-152	A0A396JBF4_MEDTR; Putative transcription factor GRAS family
STRING	POPTR_0017s06900.1	1e-114	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49950.1	1e-50	GRAS family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0312s0260.2.p