PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0311s0230.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NAC | ||||||||
Protein Properties | Length: 309aa MW: 35249.7 Da PI: 6.4063 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 161.7 | 2.9e-50 | 15 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lp+GfrFhPtd+elv++yL kk+ g+++++ +i+e+d+yk++Pw+Lp+++ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg SapurV1A.0311s0230.1.p 15 LPAGFRFHPTDDELVNHYLIKKCGGQSISV-PIIAEIDLYKYDPWQLPEMALYGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATG 100 799***************************.88***************7666789******************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 dk++ + + g+kk Lvfy g+ap+g kt+W+mheyrl SapurV1A.0311s0230.1.p 101 ADKPIGR--PKPLGIKKALVFYAGKAPRGIKTNWIMHEYRL 139 *****98..789***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.58E-61 | 6 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.828 | 15 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.6E-26 | 16 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MKGNGSAAAA DQLELPAGFR FHPTDDELVN HYLIKKCGGQ SISVPIIAEI DLYKYDPWQL 60 PEMALYGEKE WYFFSPRDRK YPNGSRPNRA AGTGYWKATG ADKPIGRPKP LGIKKALVFY 120 AGKAPRGIKT NWIMHEYRLA NVDRSAGKKN NLRLDDWVLC RIYNKKGSIE KHFPAERKSI 180 TKYSEMEEQK PNIDEMSVYQ NGRSTMGAPA TMMSHSNDLL NMDTSESAPR LHTDSSCSEH 240 VLSPEFTCEK EVQSQQKLWN DELDNALDFN FNYIDDGFQD DPFASQVQFQ MDQLSPLQDM 300 FMYSQRPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-82 | 9 | 171 | 9 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0311s0230.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CU223784 | 0.0 | CU223784.1 Populus EST from leave. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002306280.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-127 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | B9H4N3 | 0.0 | B9H4N3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s07060.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1258 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-129 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0311s0230.1.p |