PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0310s0190.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | B3 | ||||||||
Protein Properties | Length: 123aa MW: 13892 Da PI: 8.8835 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.1 | 4.7e-11 | 4 | 91 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE....EEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr....yvltkGWkeFvkangLkegDfvvFk 83 f kvl +d+ + l++p +++e+ +s++l+++d+ g+ +++ +k++++ vl++GW +Fv + gL +gD vv+ SapurV1A.0310s0190.1.p 4 FSKVL--KDTDVRVKLSFPTHCLEHLdfA--GSNSVDLRIKDSCGELRVIRC--WKRKNGghdkPVLSSGWLKFVADYGLGVGDKVVLL 86 56777..4444455699999999666763..34789*********9999999..4444333578***********************99 PP E-SSS CS B3 84 ldgrs 88 +++++ SapurV1A.0310s0190.1.p 87 REDDH 91 76553 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.85E-13 | 3 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-13 | 3 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.19E-16 | 3 | 103 | No hit | No description |
Pfam | PF02362 | 1.2E-8 | 4 | 92 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 123 aa Download sequence Send to blast |
MQIFSKVLKD TDVRVKLSFP THCLEHLDFA GSNSVDLRIK DSCGELRVIR CWKRKNGGHD 60 KPVLSSGWLK FVADYGLGVG DKVVLLREDD HSLGSQFRIE ARRKIMLLGE ETWGEVTRAT 120 NY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0310s0190.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002303154.3 | 8e-66 | uncharacterized protein LOC7480761 | ||||
TrEMBL | A0A2K2B047 | 2e-64 | A0A2K2B047_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s01220.1 | 6e-66 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12594 | 4 | 14 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0310s0190.1.p |