PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0309s0130.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

G2-like

Protein Properties

Length: 359aa MW: 40459.1 Da PI: 6.1575

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0309s0130.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.6	1.4e-33	229	283	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav+qLGGse+AtPk +l++m+v++Lt++hvkSHLQkYR+ SapurV1A.0309s0130.3.p 229 KPRMRWTPELHEAFVEAVSQLGGSERATPKGVLKHMNVESLTIYHVKSHLQKYRT 283 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.428	226	286	IPR017930	Myb domain
SuperFamily	SSF46689	1.72E-18	227	283	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.4E-31	228	285	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-24	229	283	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-10	231	282	IPR001005	SANT/Myb domain
Pfam	PF14379	4.6E-11	314	336	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MSSSFPVLPT TVDEKHPNLL FSFQVSLERE MMRNPASHQA SPLSPGNRSV GPMFSSSSRF 60 SNDMHVSSVS AQGRQSHNSP FTSQSLRNRE DFTPTHDSHS EVQSTEFIAY SDENKDLSWS 120 VDSLLDFAEN VPVQNSQVES SAGVFASEDH ANRTNWQEWA DQLISVDDDL EPHWSDILND 180 VNKTDSRQKE LKPSPNISVQ QPPIHQHQTA HSGEVCAVAN PLSPAPPTKP RMRWTPELHE 240 AFVEAVSQLG GSERATPKGV LKHMNVESLT IYHVKSHLQK YRTARYKPES SCGTSERKMS 300 PIEEIKSLDL KASMGITEAL RMQMEVQKRL HEQLEVCYWC LSFSVCGLEF RWHFLLPF*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MSSSFPVLPT TVDEKHPNLL FSFQVSLERE MMRNPASHQA SPLSPGNRSV GPMFSSSSRF  60
SNDMHVSSVS AQGRQSHNSP FTSQSLRNRE DFTPTHDSHS EVQSTEFIAY SDENKDLSWS  120
VDSLLDFAEN VPVQNSQVES SAGVFASEDH ANRTNWQEWA DQLISVDDDL EPHWSDILND  180
VNKTDSRQKE LKPSPNISVQ QPPIHQHQTA HSGEVCAVAN PLSPAPPTKP RMRWTPELHE  240
AFVEAVSQLG GSERATPKGV LKHMNVESLT IYHVKSHLQK YRTARYKPES SCGTSERKMS  300
PIEEIKSLDL KASMGITEAL RMQMEVQKRL HEQLEVCYWC LSFSVCGLEF RWHFLLPF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-29	229	287	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-29	229	287	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-29	229	287	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-29	229	287	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-29	229	287	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-29	229	287	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-29	229	287	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-29	229	287	2	60	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269\|PubMed:20838596, ECO:0000269\|PubMed:23788639}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00532	DAP	Transfer from AT5G29000	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0309s0130.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024439691.1	0.0	protein PHR1-LIKE 1 isoform X1
Swissprot	Q8GUN5	5e-81	PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBL	B9I5P9	0.0	B9I5P9_POPTR; Uncharacterized protein
STRING	POPTR_0013s04530.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G29000.2	2e-83	G2-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0309s0130.3.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Bonnot C, et al. A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana. New Phytol., 2016. 209(1): p. 161-76 [PMID:26243630] Aleksza D,Horváth GV,Sándor G,Szabados L Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation. Plant Physiol., 2017. 175(1): p. 555-567 [PMID:28765275]