PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0308s0280.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 395aa MW: 44590.6 Da PI: 6.4239

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0308s0280.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	185	1.8e-57	16	142	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 lppGfrFhPtdee++++yL++kv ++++ + ++i evd++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat+sgyWkatg SapurV1A.0308s0280.1.p 16 LPPGFRFHPTDEEIITHYLTEKVMNSSFCA-SAIGEVDLNKCEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATESGYWKATG 101 79***********************988.88***********99999****************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 kdke+++ +++lvg+kktLvfy+grapkgek++Wvmheyrl SapurV1A.0308s0280.1.p 102 KDKEIYRGRTSLVGMKKTLVFYRGRAPKGEKSNWVMHEYRL 142 ***99****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.1E-63	12	167	IPR003441	NAC domain
PROSITE profile	PS51005	60.017	16	167	IPR003441	NAC domain
Pfam	PF02365	6.5E-30	17	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MEEAIVVNKG DDLIDLPPGF RFHPTDEEII THYLTEKVMN SSFCASAIGE VDLNKCEPWD 60 LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIYRGR TSLVGMKKTL 120 VFYRGRAPKG EKSNWVMHEY RLDGKFSYYG LPKASRNEWV VCRIFHKSTG VKKSSIHEIQ 180 RMNSFGDDFL DYSSLPPFMD VNQNSRPSTS SFNGGDDNEF KAMAEKSPDG NYFSSTSMLN 240 NNQNFVHPAN TIYQAPDSSF QYPHQIPASN PLYNFQTNPN MAGYFHQGKI CNSFANFQNS 300 SFCNNDQTLL RSLARNSYGG ASGLEKQCKV EQFSSNQSMV SLSQETGLST DVNTNTEISS 360 VVSKQEIGSH DKVFDDLEGP SAGPIADLDC LWDY*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MEEAIVVNKG DDLIDLPPGF RFHPTDEEII THYLTEKVMN SSFCASAIGE VDLNKCEPWD  60
LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATESGYWKAT GKDKEIYRGR TSLVGMKKTL  120
VFYRGRAPKG EKSNWVMHEY RLDGKFSYYG LPKASRNEWV VCRIFHKSTG VKKSSIHEIQ  180
RMNSFGDDFL DYSSLPPFMD VNQNSRPSTS SFNGGDDNEF KAMAEKSPDG NYFSSTSMLN  240
NNQNFVHPAN TIYQAPDSSF QYPHQIPASN PLYNFQTNPN MAGYFHQGKI CNSFANFQNS  300
SFCNNDQTLL RSLARNSYGG ASGLEKQCKV EQFSSNQSMV SLSQETGLST DVNTNTEISS  360
VVSKQEIGSH DKVFDDLEGP SAGPIADLDC LWDY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-53	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-53	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-53	14	173	15	171	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-53	14	173	15	171	NO APICAL MERISTEM PROTEIN
3swm_A	4e-53	14	173	18	174	NAC domain-containing protein 19
3swm_B	4e-53	14	173	18	174	NAC domain-containing protein 19
3swm_C	4e-53	14	173	18	174	NAC domain-containing protein 19
3swm_D	4e-53	14	173	18	174	NAC domain-containing protein 19
3swp_A	4e-53	14	173	18	174	NAC domain-containing protein 19
3swp_B	4e-53	14	173	18	174	NAC domain-containing protein 19
3swp_C	4e-53	14	173	18	174	NAC domain-containing protein 19
3swp_D	4e-53	14	173	18	174	NAC domain-containing protein 19
4dul_A	3e-53	14	173	15	171	NAC domain-containing protein 19
4dul_B	3e-53	14	173	15	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00518	DAP	Transfer from AT5G18270	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0308s0280.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006371151.1	0.0	NAC domain-containing protein 87 isoform X1
Swissprot	Q9FK44	1e-111	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	U5FEC8	0.0	U5FEC8_POPTR; NAC family protein
STRING	POPTR_0019s04710.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-113	Arabidopsis NAC domain containing protein 87

Link Out ? help Back to Top
Phytozome	SapurV1A.0308s0280.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]