PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0308s0230.4.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

G2-like

Protein Properties

Length: 310aa MW: 34493.8 Da PI: 8.374

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0308s0230.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	32	2.7e-10	1	23	33	55
G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55 ++ m+++gLtl+h+kSHLQkYRl SapurV1A.0308s0230.4.p 1 MKRMGIPGLTLYHLKSHLQKYRL 23 789*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.3E-9	1	24	IPR009057	Homeodomain-like
Pfam	PF14379	1.6E-24	70	116	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MKRMGIPGLT LYHLKSHLQK YRLSKNLLGQ ANSGSNKIGT VVVVGDRMPE VNATHINNLS 60 IGSETNKSLH FSEALQVQIE VQRRLHEQIE VQRHLQLRIE AQGKYLQSVL EKAQETLGRQ 120 NLGTAGLETA KVQLSELVSK VSTQCLNSAF SELNDLQGLC PQQTQPTRPN DCSMDSCLTS 180 IEGSQKEQEI HNNGMGMRPY NSNPLAGEHG LQQDELKWGE NVRDNKMFLS SLRNDTERRK 240 FSPERRCSDL SISVGGRLMK GRSEYGNFQD KINKRVPYFA TSKLDLNSHG EIDAASGCGQ 300 LDLNGSSWN*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0308s0230.4.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002325408.2	0.0	myb-related protein 2 isoform X1
Swissprot	Q9SQQ9	1e-102	PHL9_ARATH; Myb-related protein 2
TrEMBL	B9IPM9	1e-180	B9IPM9_POPTR; Uncharacterized protein
STRING	POPTR_0019s04820.1	0.0	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-105	G2-like family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0308s0230.4.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]