PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0308s0230.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 385aa MW: 42789 Da PI: 8.3925 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.7 | 2.7e-33 | 46 | 100 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG+ekAtPkti++ m+++gLtl+h+kSHLQkYRl SapurV1A.0308s0230.2.p 46 KPRLKWTPDLHERFIEAVNQLGGAEKATPKTIMKRMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.229 | 43 | 103 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-30 | 44 | 101 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.65E-16 | 45 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-23 | 46 | 101 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-10 | 48 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 9.6E-20 | 147 | 191 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 385 aa Download sequence Send to blast |
MHHHHQHQGN NFHSSSRNSI PSENHLFLQV GNGPGDSGLI LSTDAKPRLK WTPDLHERFI 60 EAVNQLGGAE KATPKTIMKR MGIPGLTLYH LKSHLQKYRL SKNLLGQANS GSNKIGTVVV 120 VGDRMPEVNA THINNLSIGS ETNKSLHFSE ALQVQIEVQR RLHEQIERHL QLRIEAQGKY 180 LQSVLEKAQE TLGRQNLGTA GLETAKVQLS ELVSKVSTQC LNSAFSELND LQGLCPQQTQ 240 PTRPNDCSMD SCLTSIEGSQ KEQEIHNNGM GMRPYNSNPL AGEHGLQQDE LKWGENVRDN 300 KMFLSSLRND TERRKFSPER RCSDLSISVG GRLMKGRSEY GNFQDKINKR VPYFATSKLD 360 LNSHGEIDAA SGCGQLDLNG SSWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0308s0230.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325408.2 | 0.0 | myb-related protein 2 isoform X1 | ||||
Swissprot | Q9SQQ9 | 1e-145 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | B9IPM9 | 0.0 | B9IPM9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s04820.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-144 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0308s0230.2.p |
Publications ? help Back to Top | |||
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