PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0308s0230.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 387aa MW: 43016.2 Da PI: 8.3925 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 105.6 | 2.8e-33 | 46 | 100 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHerF+eav+qLGG+ekAtPkti++ m+++gLtl+h+kSHLQkYRl SapurV1A.0308s0230.1.p 46 KPRLKWTPDLHERFIEAVNQLGGAEKATPKTIMKRMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.229 | 43 | 103 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.9E-30 | 44 | 101 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.67E-16 | 45 | 101 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.7E-23 | 46 | 101 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-10 | 48 | 99 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 2.2E-24 | 147 | 193 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 387 aa Download sequence Send to blast |
MHHHHQHQGN NFHSSSRNSI PSENHLFLQV GNGPGDSGLI LSTDAKPRLK WTPDLHERFI 60 EAVNQLGGAE KATPKTIMKR MGIPGLTLYH LKSHLQKYRL SKNLLGQANS GSNKIGTVVV 120 VGDRMPEVNA THINNLSIGS ETNKSLHFSE ALQVQIEVQR RLHEQIEVQR HLQLRIEAQG 180 KYLQSVLEKA QETLGRQNLG TAGLETAKVQ LSELVSKVST QCLNSAFSEL NDLQGLCPQQ 240 TQPTRPNDCS MDSCLTSIEG SQKEQEIHNN GMGMRPYNSN PLAGEHGLQQ DELKWGENVR 300 DNKMFLSSLR NDTERRKFSP ERRCSDLSIS VGGRLMKGRS EYGNFQDKIN KRVPYFATSK 360 LDLNSHGEID AASGCGQLDL NGSSWN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 6e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-21 | 46 | 102 | 1 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:15592750}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0308s0230.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269|PubMed:15592750}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002325408.2 | 0.0 | myb-related protein 2 isoform X1 | ||||
Swissprot | Q9SQQ9 | 1e-149 | PHL9_ARATH; Myb-related protein 2 | ||||
TrEMBL | B9IPM9 | 0.0 | B9IPM9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0019s04820.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3852 | 31 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04030.3 | 1e-147 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0308s0230.1.p |
Publications ? help Back to Top | |||
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