PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0307s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 412aa    MW: 45873 Da    PI: 6.3075
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0307s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.81.2e-33202256155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             k r+rWtp+LHe+Fveav+qLGGse+AtPk +l+ m+v+gLt++hvkSHLQkYR+
  SapurV1A.0307s0080.1.p 202 KSRMRWTPDLHEAFVEAVNQLGGSERATPKGVLKQMNVEGLTIYHVKSHLQKYRT 256
                             68****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.898199259IPR017930Myb domain
SuperFamilySSF466891.34E-17200256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-31201258IPR009057Homeodomain-like
TIGRFAMsTIGR015571.3E-24202256IPR006447Myb domain, plants
PfamPF002495.5E-10204255IPR001005SANT/Myb domain
PfamPF143791.8E-23289334IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MIRNLASQQA SPLSSGNGSV GHLVSSSSRF TNDMNVSAVS PQGKQSHNSS FISQSQRGGG  60
NFPPTHYCHS EGHSTAFINH SDDNKDLSWP IDPLQDFHNF VENVPVQNGQ VESTVGVIAS  120
EDHAKRTDWQ EWADQLISVD DELEPDWSEI LNDVNMKDSK LKMLSPSPNN SVQQPLIHQH  180
QTAHSGEVCA VTNPLLAAPP TKSRMRWTPD LHEAFVEAVN QLGGSERATP KGVLKQMNVE  240
GLTIYHVKSH LQKYRTARYK PESSEGTSEK KLSPVEEMKS LDLKTSTGIS EALRLQMEVQ  300
KQLHEQLEIQ RNLQLRIEEQ GRYLQEMFEK QRKMEVDKSK APPPSQNDPS LLQSKLERSP  360
ANDKLEASGL DCVKTRFDTC NASGLLEESS QSISRKHKAP EDRNGQVVDK N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A1e-30202260260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B1e-30202260260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A1e-30202260260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C1e-30202260260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D1e-30202260260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F1e-30202260260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H1e-30202260260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J1e-30202260260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0307s0080.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036348.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X4
RefseqXP_011036349.10.0PREDICTED: protein PHR1-LIKE 1-like isoform X4
SwissprotQ8GUN55e-95PHL1_ARATH; Protein PHR1-LIKE 1
TrEMBLA0A2K1WN810.0A0A2K1WN81_POPTR; Uncharacterized protein
STRINGPOPTR_0019s03750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15123498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G29000.37e-98G2-like family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Bonnot C, et al.
    A chemical genetic strategy identify the PHOSTIN, a synthetic molecule that triggers phosphate starvation responses in Arabidopsis thaliana.
    New Phytol., 2016. 209(1): p. 161-76
    [PMID:26243630]
  4. Aleksza D,Horváth GV,Sándor G,Szabados L
    Proline Accumulation Is Regulated by Transcription Factors Associated with Phosphate Starvation.
    Plant Physiol., 2017. 175(1): p. 555-567
    [PMID:28765275]