PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0304s0080.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TCP | ||||||||
Protein Properties | Length: 465aa MW: 52527.6 Da PI: 9.7614 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 152.9 | 2e-47 | 101 | 257 | 2 | 134 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.................ssssas 71 +gkkdrhski T++g+RdRR+Rls+++a++fFdLqd+LGfdk+sktieWL++++k+aikelt+t ss+ SapurV1A.0304s0080.1.p 101 TGKKDRHSKINTAQGPRDRRMRLSLQIARKFFDLQDMLGFDKASKTIEWLFTKSKAAIKELTDTvpkvrkwsrtsaggksvSST--- 184 79**************************************************************99887775544433322111... PP TCP 72 eceaesssssasnsssg....................kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134 +es++ ++ s++k+k+s+k ++ + n+ + esr+kararar+rtrekm++k SapurV1A.0304s0080.1.p 185 ---SESEV--------VsgikltldrngdrrvmeaksDSLVSKPKEKRSKKVHKPVFNPVDrESREKARARARDRTREKMKNKG 257 ...11222........1233344445555666777665555555555555555545666666*******************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.5E-46 | 101 | 255 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 37.88 | 103 | 161 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 11.188 | 235 | 252 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 465 aa Download sequence Send to blast |
MIASTYADPE NPSSIEYYSP TSFLQNFPDL FLDDDDLQVG ELISQQQQQP EVFGSNTHFL 60 AVETPEINPE ASNEESKRKI NNSKKRGNVN TSKQPIRQRR TGKKDRHSKI NTAQGPRDRR 120 MRLSLQIARK FFDLQDMLGF DKASKTIEWL FTKSKAAIKE LTDTVPKVRK WSRTSAGGKS 180 VSSTSESEVV SGIKLTLDRN GDRRVMEAKS DSLVSKPKEK RSKKVHKPVF NPVDRESREK 240 ARARARDRTR EKMKNKGIDK LSQSSQANPD SLEKFGYSSS SLEYGENFAS GRQEINSVKV 300 VDEGEESNNH HHLLPHQMDH DSIIDKFFGI TNSPRSSSIF DFSESVDVPT LKDEFSGFPL 360 KWDVTNGRVQ YKYNALPNMK LPSGNVQAQN PNANFMTTPH ALEQNSNAMI MATLNAHVEE 420 SPISTFMNMS NPNEQNPSSI LKTIDSGNQF SSSRIFARDY DRLY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0304s0080.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | GU129191 | 0.0 | GU129191.1 Populus nigra TCP transcription factor (TB2) gene, partial cds. | |||
GenBank | GU129192 | 0.0 | GU129192.1 Populus balsamifera TCP transcription factor (TB2) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011008633.1 | 0.0 | PREDICTED: transcription factor TCP12-like | ||||
TrEMBL | A0A2K1YTC7 | 0.0 | A0A2K1YTC7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s14030.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1738 | 32 | 94 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 3e-32 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0304s0080.1.p |