PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0303s0100.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HB-other
Protein Properties Length: 296aa    MW: 33770.2 Da    PI: 7.2188
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0303s0100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox21.92.9e-071474755
                            --HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
                Homeobox  7 ftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55
                            f +++++e+e+  ++  n  p +e    LA+k           +++ +qV +WFqNrR+  
  SapurV1A.0303s0100.2.p 14 FMQNEVTEMEAILQEynNTMPAREVLVSLAEKFsespdrkgniQVQMKQVWNWFQNRRYAI 74
                            778889999999996659999********************99***************865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.11E-9477IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-61382IPR009057Homeodomain-like
PROSITE profilePS500719.751377IPR001356Homeobox domain
CDDcd000860.002391375No hitNo description
PfamPF000468.7E-51474IPR001356Homeobox domain
PfamPF167191.0E-38132248IPR032001SAWADEE domain
CDDcd000240.00369146178No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGRPPSNGGP SFRFMQNEVT EMEAILQEYN NTMPAREVLV SLAEKFSESP DRKGNIQVQM  60
KQVWNWFQNR RYAIRAKSSK SPMKLNITPM HRDDLAAARG ISQQVADPIP GAVPTTTPAS  120
SAAGRATSEN SYMEFEAKSA RDGAWYDVGT FLSHRYLDKG DPEVLVRFSG FGPDEDEWLD  180
VRRQVRQRSL PCEASECVAV LPGDLTLCFQ EGKDQALYFD AHVLDAQRRR HDVRGCRCRF  240
LVRYDHDQSE VYLHFYLLKF IFPVSDVQRP LEHLVYYMTS VKLISFFHGL GNNFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A7e-401332504121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B7e-401332504121SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A7e-401332504121SHH1 SAWADEE
4iur_B7e-401332504121SHH1 SAWADEE
4iut_A7e-401332504121SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B7e-401332504121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A7e-401332504121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B7e-401332504121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A7e-401332504121SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B7e-401332504121SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0303s0100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008296.11e-176PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2-like isoform X2
SwissprotQ8RWJ71e-124SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2K1YHZ21e-169A0A2K1YHZ2_POPTR; Uncharacterized protein
TrEMBLA0A3N7FR891e-169A0A3N7FR89_POPTR; Uncharacterized protein
STRINGLus100136841e-146(Linum usitatissimum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.31e-106sequence-specific DNA binding transcription factors;sequence-specific DNA binding