PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0303s0040.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TCP | ||||||||
Protein Properties | Length: 401aa MW: 43618 Da PI: 6.5665 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 115.2 | 8.5e-36 | 35 | 158 | 2 | 108 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasecea 75 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+ +WL+++a ++i+el+++ +s++a+ +++ SapurV1A.0303s0040.1.p 35 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAFDWLIKKARASIDELAELppwdpatagftpkTSKTATGSTQ 121 79**************************************************************98888877554332222222234 PP TCP 76 esssssasnsssg......kaaksaa.kskksqksaasal 108 ++s s +++++++ + +++a + ++ q++ a SapurV1A.0303s0040.1.p 122 HQSISDEKEHGISvenvatS-KTAAVaEVQNMQQQMA--E 158 44444444333337766431.2222212222222222..2 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 5.9E-33 | 35 | 156 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.661 | 37 | 95 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 401 aa Download sequence Send to blast |
MGESHHQAAT SSRSGISDTV GEIVEVQGGH IVRSTGRKDR HSKVCTAKGP RDRRVRLSAH 60 TAIQFYDVQD RLGYDRPSKA FDWLIKKARA SIDELAELPP WDPATAGFTP KTSKTATGST 120 QHQSISDEKE HGISVENVAT SKTAAVAEVQ NMQQQMAENL NSSSGFLPPS LDSDVIAETI 180 KTFFPMGAST ETSSPTIRFQ NYPPDLLSRT SSQSQDLRLS LLSFQEPTLL RHQAHHHGHQ 240 VQSEHQVLFS GTTAHYLGFD CSSGGWSEQQ QPPEIIRFQR NPVAWNAEDV GGGGRAGLIF 300 NASLPPTQTM PSSPFVQPLF GQNQFFSQRG TLQSSNTPSF RAWTDPAINP DHLQQQQTAI 360 SGIGFTASDG GFSGFRVPAR VEGEEEECNK PSSVSSDSRS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-20 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 7e-20 | 42 | 95 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0303s0040.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011044951.1 | 0.0 | PREDICTED: transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 6e-98 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | A0A3S9LYI1 | 0.0 | A0A3S9LYI1_POPTO; Transcription factor TCP4-like | ||||
STRING | POPTR_0011s09890.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53230.1 | 1e-92 | TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0303s0040.1.p |