PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0302s0220.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 553aa    MW: 61805.5 Da    PI: 7.1083
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0302s0220.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.001931123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C+ C+ksF +  +L  H+r H
  SapurV1A.0302s0220.1.p  9 HVCKLCKKSFLTGNMLGGHMRIH 31
                            79*******************99 PP
2zf-C2H211.40.0009881102223
                             EETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             kC  Cgk F +  +L+ H+r H
  SapurV1A.0302s0220.1.p  81 KCRFCGKEFGSEKSLHGHMRHH 102
                             7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.56E-7535No hitNo description
Gene3DG3DSA:3.30.160.603.5E-4631IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.15931IPR015880Zinc finger, C2H2-like
PfamPF139125.1E-5931IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.658936IPR007087Zinc finger, C2H2
PROSITE patternPS0002801131IPR007087Zinc finger, C2H2
SMARTSM003550.02180102IPR015880Zinc finger, C2H2-like
SuperFamilySSF576678.85E-780132No hitNo description
PROSITE profilePS5015711.44880107IPR007087Zinc finger, C2H2
PfamPF139127.7E-481104IPR007087Zinc finger, C2H2
PROSITE patternPS00028082102IPR007087Zinc finger, C2H2
SMARTSM0035583111132IPR015880Zinc finger, C2H2-like
PfamPF139120.05114134IPR007087Zinc finger, C2H2
SMARTSM003550.57390412IPR015880Zinc finger, C2H2-like
PfamPF139125.6E-5390414IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349390417IPR007087Zinc finger, C2H2
SuperFamilySSF576671.68E-7390412No hitNo description
PROSITE patternPS000280392412IPR007087Zinc finger, C2H2
SuperFamilySSF576671.68E-7464491No hitNo description
SMARTSM003550.64469491IPR015880Zinc finger, C2H2-like
PfamPF139124.3E-9469491IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182469491IPR007087Zinc finger, C2H2
PROSITE patternPS000280471491IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 553 aa     Download sequence    Send to blast
MKTNQEKLHV CKLCKKSFLT GNMLGGHMRI HGTRKSSKGH VKFESSNVGS DSYGLREQPK  60
KSWKFSGLNH GDSVSMQETV KCRFCGKEFG SEKSLHGHMR HHSAKERKGV YREECGRGFL  120
SLKSLSNHKR LHRENFRISS ESRASCRPNV VVMALSATGA VNLVRRKRSS RMRYKIASNS  180
SFSSLNESVS GFDIEQQVEE AALALIMMSR CECNGFDSFC QNKRIKRVED CHILYGNELV  240
KPKKPREDSL DSCDLDSMIS MDGCYDDTET GCDEENQVRS EVPKESIFKD TESQSPQLDD  300
ESGVEFCGID IEKGDHDEMI TNRTDAESSQ DLMSEVGLDC AGLGFEKSIP SNQARFDACN  360
AEMGKESRFQ IAVTTSSSDI MQGPSKKGDF TCRICNRKFI TYQSLGGHQT FHRKSPIEVK  420
VDSCEKDIQA NVSAETEATG KLECIQELAR QESDEVILKD CESKDGKEHK CSICFKVFVS  480
GQALGGHKRA HFPRAREEQN IAMKQEVSGI CDVLNMNVPY TVSAEASNDV RCESWWPANS  540
HRHEPLVGLI AN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0302s0220.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454917.10.0zinc finger protein 423
TrEMBLA0A2I4KKW90.0A0A2I4KKW9_POPTR; C2H2 family protein
STRINGPOPTR_0004s11730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133592027
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67450.18e-18zinc-finger protein 1