PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0302s0150.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WRKY | ||||||||
Protein Properties | Length: 384aa MW: 42698.3 Da PI: 9.2525 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 104.4 | 6e-33 | 93 | 149 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK++kgse+prsYY+Ct+ +C+vkkkvers+ d++++ei+Y+g+Hnh+ SapurV1A.0302s0150.4.p 93 DDGYNWRKYGQKSIKGSEYPRSYYKCTHINCSVKKKVERSS-DGQITEIIYKGQHNHD 149 8****************************************.***************7 PP | |||||||
2 | WRKY | 106.8 | 1.1e-33 | 272 | 330 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+ dpk+v++tYeg+Hnh+ SapurV1A.0302s0150.4.p 272 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERAPADPKAVVTTYEGKHNHD 330 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.686 | 87 | 151 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-28 | 89 | 150 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-26 | 90 | 150 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.4E-36 | 92 | 150 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.5E-26 | 93 | 149 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 6.1E-37 | 257 | 332 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.44E-29 | 264 | 332 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.503 | 267 | 332 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-39 | 272 | 331 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.8E-26 | 273 | 330 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 384 aa Download sequence Send to blast |
MSHQQALAQV TAQAALHAQS QMHMQAQYQP STVTTAKDLL TRYPSFNPGE ALQQKQQMPP 60 STSDAQNSMV EAAEFSHSER KYQPPPAGDK PTDDGYNWRK YGQKSIKGSE YPRSYYKCTH 120 INCSVKKKVE RSSDGQITEI IYKGQHNHDR AQVNKLSKDG DDSNGSIHPQ SKPEVVSQAH 180 AGNARKFTET LPAHSVTRKD QESTKAGHSE KPGSSDNEEA GNAAVQDEER GDDEPIPKRR 240 QIDVVTSEVT LPHKTVTEPK IIVQTRSEVD LLDDGYRWRK YGQKVVKGNP HPRSYYKCTS 300 AGCNVRKHVE RAPADPKAVV TTYEGKHNHD VPAARNSVHN NTASANAAPL KPQKVVVEKH 360 PMDYGNNDQR QLLLRLKDEK IAV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-40 | 93 | 333 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-40 | 93 | 333 | 8 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0302s0150.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024454278.1 | 0.0 | probable WRKY transcription factor 3 | ||||
Swissprot | Q9ZQ70 | 1e-110 | WRKY3_ARATH; Probable WRKY transcription factor 3 | ||||
TrEMBL | A0A2K2ATH3 | 0.0 | A0A2K2ATH3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s12000.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-105 | WRKY DNA-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0302s0150.4.p |
Publications ? help Back to Top | |||
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