PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0302s0150.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 390aa    MW: 43346.1 Da    PI: 9.2525
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0302s0150.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY104.46.1e-3399155259
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             dDgynWrKYGqK++kgse+prsYY+Ct+ +C+vkkkvers+ d++++ei+Y+g+Hnh+
  SapurV1A.0302s0150.2.p  99 DDGYNWRKYGQKSIKGSEYPRSYYKCTHINCSVKKKVERSS-DGQITEIIYKGQHNHD 155
                             8****************************************.***************7 PP
2WRKY106.71.1e-33278336159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+  dpk+v++tYeg+Hnh+
  SapurV1A.0302s0150.2.p 278 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERAPADPKAVVTTYEGKHNHD 336
                             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.68693157IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.4E-2895156IPR003657WRKY domain
SuperFamilySSF1182906.67E-2696156IPR003657WRKY domain
SMARTSM007743.4E-3698156IPR003657WRKY domain
PfamPF031067.7E-2699155IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-37263338IPR003657WRKY domain
SuperFamilySSF1182901.44E-29270338IPR003657WRKY domain
PROSITE profilePS5081138.503273338IPR003657WRKY domain
SMARTSM007741.1E-39278337IPR003657WRKY domain
PfamPF031062.9E-26279336IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MQSPFGMSHQ QALAQVTAQA ALHAQSQMHM QAQYQPSTVT TAKDLLTRYP SFNPGEALQQ  60
KQQMPPSTSD AQNSMVEAAE FSHSERKYQP PPAGDKPTDD GYNWRKYGQK SIKGSEYPRS  120
YYKCTHINCS VKKKVERSSD GQITEIIYKG QHNHDRAQVN KLSKDGDDSN GSIHPQSKPE  180
VVSQAHAGNA RKFTETLPAH SVTRKDQEST KAGHSEKPGS SDNEEAGNAA VQDEERGDDE  240
PIPKRRQIDV VTSEVTLPHK TVTEPKIIVQ TRSEVDLLDD GYRWRKYGQK VVKGNPHPRS  300
YYKCTSAGCN VRKHVERAPA DPKAVVTTYE GKHNHDVPAA RNSVHNNTAS ANAAPLKPQK  360
VVVEKHPMDY GNNDQRQLLL RLKDEKIAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-4099339878Probable WRKY transcription factor 4
2lex_A2e-4099339878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0302s0150.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454278.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-113WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2K2ATH30.0A0A2K2ATH3_POPTR; Uncharacterized protein
STRINGPOPTR_0004s12000.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-105WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]