PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0302s0150.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 538aa    MW: 59093.8 Da    PI: 9.3263
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0302s0150.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY103.89.7e-33247303259
                             --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             dDgynWrKYGqK++kgse+prsYY+Ct+ +C+vkkkvers+ d++++ei+Y+g+Hnh+
  SapurV1A.0302s0150.1.p 247 DDGYNWRKYGQKSIKGSEYPRSYYKCTHINCSVKKKVERSS-DGQITEIIYKGQHNHD 303
                             8****************************************.***************7 PP
2WRKY106.11.8e-33426484159
                             ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                             ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+  dpk+v++tYeg+Hnh+
  SapurV1A.0302s0150.1.p 426 LDDGYRWRKYGQKVVKGNPHPRSYYKCTSAGCNVRKHVERAPADPKAVVTTYEGKHNHD 484
                             59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.686241305IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-28243304IPR003657WRKY domain
SuperFamilySSF1182901.06E-25244304IPR003657WRKY domain
SMARTSM007743.4E-36246304IPR003657WRKY domain
PfamPF031061.2E-25247303IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.0E-36411486IPR003657WRKY domain
SuperFamilySSF1182902.35E-29418486IPR003657WRKY domain
PROSITE profilePS5081138.503421486IPR003657WRKY domain
SMARTSM007741.1E-39426485IPR003657WRKY domain
PfamPF031064.6E-26427484IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MAEKQENPTT TAPAKPTITL PPRPSMETLF TGGLSPGPMT LVSSFFADTP YPESDYRSFS  60
QLLAGAMASP ISRPAFFTDN LIPNNNNTNT NATTTAIPFS KEDGINSNSN LGFKRSRPVN  120
LMVARSPLFT VPPGLSPSGL LDSPGFFSPR SPFGMSHQQA LAQVTAQAAL HAQSQMHMQA  180
QYQPSTVTTA KDLLTRYPSF NPGEALQQKQ QMPPSTSDAQ NSMVEAAEFS HSERKYQPPP  240
AGDKPTDDGY NWRKYGQKSI KGSEYPRSYY KCTHINCSVK KKVERSSDGQ ITEIIYKGQH  300
NHDRAQVNKL SKDGDDSNGS IHPQSKPEVV SQAHAGNARK FTETLPAHSV TRKDQESTKA  360
GHSEKPGSSD NEEAGNAAVQ DEERGDDEPI PKRRQIDVVT SEVTLPHKTV TEPKIIVQTR  420
SEVDLLDDGY RWRKYGQKVV KGNPHPRSYY KCTSAGCNVR KHVERAPADP KAVVTTYEGK  480
HNHDVPAARN SVHNNTASAN AAPLKPQKVV VEKHPMDYGN NDQRQLLLRL KDEKIAV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-39247487878Probable WRKY transcription factor 4
2lex_A1e-39247487878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0302s0150.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024454278.10.0probable WRKY transcription factor 3
SwissprotQ9ZQ701e-143WRKY3_ARATH; Probable WRKY transcription factor 3
TrEMBLA0A2K2ATH30.0A0A2K2ATH3_POPTR; Uncharacterized protein
STRINGPOPTR_0004s12000.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF154534100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03340.11e-126WRKY DNA-binding protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]