PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0301s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | TCP | ||||||||
Protein Properties | Length: 406aa MW: 46216.8 Da PI: 7.9637 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 125 | 8e-39 | 129 | 286 | 3 | 135 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssasece 74 kkdrhski T++g+RdRR+Rls+++a+ fFdLqd+L fdk+skt+eWLl+qa ++ik++ g s+ss sece SapurV1A.0301s0010.1.p 129 SKKDRHSKINTAQGPRDRRMRLSLKVARDFFDLQDKLRFDKASKTVEWLLTQARTEIKKISGGfpvmnyscsttvgakSASSTSECE 215 69*************************************************************999999999988776555556673 PP TCP 75 aesssssasnsssg................kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 s+ + + + k+++ + ++s+k a + +ake+r+kar+rarert++k r +++ SapurV1A.0301s0010.1.p 216 VLSEMINID----StlkvsrvskgksslcvKKERRTSRASSSRK--APLNPFAKETREKARERARERTKQKLRSRSR 286 333333333....0222344455566665544444433333333..44489999*****************998865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.5E-41 | 129 | 282 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.383 | 130 | 188 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.623 | 263 | 280 | IPR017888 | CYC/TB1, R domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 406 aa Download sequence Send to blast |
MFPLSSNGYD PISYNDHQAY NMPFFSDIIS NSKQYVPPPI SFCHLPSPFF AYDQPELEDH 60 SILLQQSYDL LLHQQPLRAT ATSCTAPSQS TVGNNMVDSS KNDVIDEITE ICNKQSHSST 120 EQVPRKRSSK KDRHSKINTA QGPRDRRMRL SLKVARDFFD LQDKLRFDKA SKTVEWLLTQ 180 ARTEIKKISG GFPVMNYSCS TTVGAKSASS TSECEVLSEM INIDSTLKVS RVSKGKSSLC 240 VKKERRTSRA SSSRKAPLNP FAKETREKAR ERARERTKQK LRSRSRRLDE SKPCELEAVN 300 QEFNQFAGCW SPFETGDQES GTHNINPSLE VQLVEAEVPF YQEKEQLDTR EGMIDETLVS 360 IGKWSPSFPN HLHKNGIPQE NQFTDFQYPL YKTWDHEAYN IDGMC* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0301s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322035.2 | 0.0 | transcription factor TCP12 | ||||
Refseq | XP_024442245.1 | 0.0 | transcription factor TCP12 | ||||
TrEMBL | B9IDZ9 | 0.0 | B9IDZ9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s03140.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6564 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68800.1 | 3e-21 | TCP domain protein 12 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0301s0010.1.p |