PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0300s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ZF-HD
Protein Properties Length: 328aa    MW: 36096.8 Da    PI: 8.6153
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0300s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer1101.3e-3465121459
             ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                             ++YkeClkNhAa++Ggha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre+e+
  SapurV1A.0300s0060.1.p  65 ITYKECLKNHAATIGGHALDGCGEFMPSPTAThTNPTSLKCAACGCHRNFHRREPED 121
                             79***************************9999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047703.0E-2865119IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2265118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.5E-3166118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.71567118IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.63E-17196262IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28199263IPR009057Homeodomain-like
TIGRFAMsTIGR015653.1E-24201258IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    Send to blast
MDITIPTTPT SNNNNTNTPT PKSPEAYTET PARIHDTKPL SFTNGVLKRH PPHHHHHFSA  60
SPIAITYKEC LKNHAATIGG HALDGCGEFM PSPTATHTNP TSLKCAACGC HRNFHRREPE  120
DSPPHIATTT TIEYQSHHRH HPPPPPQAQP QQNGSPNSAS PPPISSSYYP SAPHMLLALS  180
GGVSGLNENA NINVPPLASP RKRFRTKFSQ SQKEKMYQFA ERVGWKMQKR DEELVQGFCN  240
EVGVDKGVLK VWMHNNKNSL GKKEHLNGNH NDILRSNNLE ISNHSNNETN KNNNSSEGLN  300
HHNNHHHFEN ESHVAPVIGT NGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-212022591875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0300s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324056.31e-152zinc-finger homeodomain protein 9
RefseqXP_006373321.21e-152zinc-finger homeodomain protein 9
RefseqXP_024444049.11e-152zinc-finger homeodomain protein 9
SwissprotQ9LXG03e-76ZHD8_ARATH; Zinc-finger homeodomain protein 8
TrEMBLA0A2K1X5121e-150A0A2K1X512_POPTR; Uncharacterized protein
STRINGPOPTR_0017s11920.11e-154(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.16e-71homeobox protein 34
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]