PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0295s0450.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 443aa    MW: 47692 Da    PI: 5.7857
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0295s0450.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS379.54.1e-116814394374
                    GRAS   4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                              Ll+cAe+v+ ++l+ a+ lL ++ el+sp g++ +R+ ayf+ AL+ar+++s+ ++y+ l +++ ++++s++ ++al+ ++ +sP+
  SapurV1A.0295s0450.1.p  81 ILLQCAECVAMDNLNDATDLLPEIAELSSPFGSSPERVGAYFAHALQARVVSSCLGTYSPLVSKPVTRTQSQKLFNALQSYNSISPL 167
                             69************************************************************************************* PP

                    GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfe 177
                             +kfsh+taNqaI +a++ge+rvHiiD+di+qGlQWp L++ LasRp++  s+RiTg+gs    s+e le+tg+rLa+fA++lg+pfe
  SapurV1A.0295s0450.1.p 168 VKFSHFTANQAIFQALDGEDRVHIIDLDIMQGLQWPGLFHILASRPRKIRSMRITGFGS----STELLESTGRRLADFASSLGLPFE 250
                             ***********************************************************....99********************** PP

                    GRAS 178 fnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyy 264
                             f++l  k  +   l++L v+p+Ea++V++++  h l+d ++s       +Lkl+  l+Pk+++ veq+++h ++sFl rf+eal+yy
  SapurV1A.0295s0450.1.p 251 FHPLEGKIGDVAGLSQLGVRPREAIVVHWMH--HCLYDVTGSDLG----TLKLLALLRPKLITTVEQDLSH-GGSFLGRFVEALHYY 330
                             ***8777677779*****************9..888888888888....**********************.789************ PP

                    GRAS 265 salfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrv 351
                             salfd+l  +l+ +s er++vE++l+g ei+n+va  g +r+ + + +e+W + l +aGF+pv+l+ + a+qa+lll +++++gy++
  SapurV1A.0295s0450.1.p 331 SALFDALGDGLGVDSVERHTVEQQLFGCEIRNIVAVGGPKRTGEVK-FERWGDELIRAGFQPVSLQGNPAAQASLLLGMFPWKGYTL 416
                             ****************************************998887.**************************************** PP

                    GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                              ee+g+l lgWkd +L+++SaW+
  SapurV1A.0295s0450.1.p 417 VEENGCLKLGWKDLSLLTASAWQ 439
                             **********************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.6752419IPR005202Transcription factor GRAS
PfamPF035141.4E-11381439IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MLQSLIPQSP INSTNPNNSS SSSSSMKSKR AAAGESSGDD PSSKRVSYEN PTSEIVSSSN  60
LVEGGGGDDG GESSGLRLLG ILLQCAECVA MDNLNDATDL LPEIAELSSP FGSSPERVGA  120
YFAHALQARV VSSCLGTYSP LVSKPVTRTQ SQKLFNALQS YNSISPLVKF SHFTANQAIF  180
QALDGEDRVH IIDLDIMQGL QWPGLFHILA SRPRKIRSMR ITGFGSSTEL LESTGRRLAD  240
FASSLGLPFE FHPLEGKIGD VAGLSQLGVR PREAIVVHWM HHCLYDVTGS DLGTLKLLAL  300
LRPKLITTVE QDLSHGGSFL GRFVEALHYY SALFDALGDG LGVDSVERHT VEQQLFGCEI  360
RNIVAVGGPK RTGEVKFERW GDELIRAGFQ PVSLQGNPAA QASLLLGMFP WKGYTLVEEN  420
GCLKLGWKDL SLLTASAWQP SD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1658444025380Protein SCARECROW
5b3h_A1e-1658444024379Protein SCARECROW
5b3h_D1e-1658444024379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0295s0450.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011000635.10.0PREDICTED: scarecrow-like protein 23 isoform X1
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLB9HD660.0B9HD66_POPTR; Uncharacterized protein
STRINGPOPTR_0006s02220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]