PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0294s0270.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family SBP
Protein Properties Length: 1006aa    MW: 111293 Da    PI: 6.6915
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0294s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.92.2e-41150227178
                             --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                     SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                             +Cqve+C +dls+ak+yhrrhkvCe+hska ++lv + +qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  SapurV1A.0294s0270.1.p 150 VCQVEDCGVDLSNAKDYHRRHKVCEMHSKAGKALVGNAMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNP 227
                             6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.105.6E-33144212IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.043148225IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.27E-38149230IPR004333Transcription factor, SBP-box
PfamPF031108.9E-30151224IPR004333Transcription factor, SBP-box
SuperFamilySSF484032.32E-6778890IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.2E-5781892IPR020683Ankyrin repeat-containing domain
CDDcd002041.87E-7781888No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1006 aa     Download sequence    Send to blast
MEARFGGEAQ HFYATAPSDM RTAGKRAIEW DLNDWKWDGD LFIASPLNPA PSTGISRQFS  60
SPGVGTGILV TGNSSNSSSL CSDEVNLGAE KGKKELEKRR RVVVIDDDNL NDQETGGLSL  120
KLGGERDAGN WEGSIGKKTK LVGSGSSRAV CQVEDCGVDL SNAKDYHRRH KVCEMHSKAG  180
KALVGNAMQR FCQQCSRFHV LQEFDEGKRS CRRRLAGHNK RRRKTNPDAV GNGSSMNDDQ  240
TSGYLLISLL RILSNMHSNR SDQTIDQDLL SHLLRSLASH GLEHGGRNIF GLLQEPRDSS  300
TSFGNSAIDS NLLSNGEGPS KPLKQHLSVP IFGMPQQVKH LHDANGANIQ TTSSLKPSIP  360
NNFATYSEVR ESTAGQVKMN NFDLNDIYID SDEGTEDVER SPAPVNARTS SLDCPSWIQQ  420
DSRQSSPPQT SRNSDSASAQ SPSSSSGEAQ SRTDRIVFKL FGKEPNDFPF VLRAQILDWL  480
SHSPTDIESY IRPGCIILTI YLRQPEAAWE ELCCDLGSSL SRLLDVSDNS FWRTGWVYIR  540
AQHQIAFVYN GQVVVDTSLP LRNNNCSKIL SVKPIAISAS EKANFLIKGF NLSRPATRLL  600
CAVEGNYLVQ DNAQELMDGD GSIKSHDEVH CVNFSCSIPT LTGRGFIEIE DHGFSSSFFP  660
FLVAEEDVCS EICTLEGVLE FNETDADFGE TAKMEAKNQA MDFVHEMGWL LHRSQLKSRL  720
GHLNPSMDLF PLRRFNWLME FSMDHEWCAV VRKLLNILHN GIVCTGDQLS LNEALSDMGL  780
LHRAVRRNSR SLVELLLRFV PDKFGSKDKA LDGRSHESIL FRPDVIGPAG LTPLHIAAGK  840
DGSEDVLDSL TEDPGMVGVV AWKNARDSTG FSPEDYARLR GHYSYIHLVQ KKSKREAVGH  900
VVLDIPSNLS NSTVTINEKQ TEGLTSGFEI GHTEPRPVQR NCKLCSQKVV YGTARRSRHV  960
YRPAMLSMVA IAAVCVCVAL LFKSCPEVLY VFRPFRWELL DYGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-291502241084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
197101KRRRV
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000269|PubMed:16554053}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0294s0270.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2311721e-161CU231172.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320264.20.0squamosa promoter-binding-like protein 1
SwissprotQ9S7P50.0SPL12_ARATH; Squamosa promoter-binding-like protein 12
TrEMBLA0A2I4KKA70.0A0A2I4KKA7_POPTR; SBP family protein
STRINGPOPTR_0014s10960.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12
Publications ? help Back to Top
  1. Jung S, et al.
    Synteny conservation between the Prunus genome and both the present and ancestral Arabidopsis genomes.
    BMC Genomics, 2006. 7: p. 81
    [PMID:16615871]
  2. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  3. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]