PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0292s0200.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 169aa    MW: 18617 Da    PI: 9.9622
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0292s0200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.93.6e-056183123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C++ F++   L  H+++H
  SapurV1A.0292s0200.1.p 61 YTCSFCKREFKSAQALGGHMNVH 83
                            9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.14E-65887No hitNo description
PROSITE profilePS5015711.1776188IPR007087Zinc finger, C2H2
PfamPF139121.2E-66184IPR007087Zinc finger, C2H2
SMARTSM003550.00326183IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806383IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MERNSLSSDM SCPSLGSRAS NNNEKKKKKK KKLGDSWSFS SCQSYGHDDY PDGLSWPPRS  60
YTCSFCKREF KSAQALGGHM NVHRRDRARL RLSPPRDDQC PILTLNLYPN PSFCTPFNRT  120
IPSLVSPPPL TALSSPSLVS EVKKWTIGGN PLVPSSPDLS DITTNGSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-145683229superman protein
2l1o_A5e-145683229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12332EKKKKKKKKL
22531KKKKKKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0292s0200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX9873011e-167JX987301.1 Populus tomentosa isolate PtoSUP2 superman gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002311666.31e-86transcriptional regulator SUPERMAN
TrEMBLR4L8304e-88R4L830_POPTO; Superman
STRINGPOPTR_0008s16390.11e-78(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28433171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.12e-24C2H2 family protein