PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0289s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ARF
Protein Properties Length: 941aa    MW: 104002 Da    PI: 6.5113
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0289s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.23.2e-23133234199
                             EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                             f+k+lt sd++++g +++p++ ae+        + ++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+
  SapurV1A.0289s0180.1.p 133 FCKTLTASDTSTHGGFSVPRRAAEKVfppldyALTPPA-QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVL 218
                             99***********************9****99666655.49********************************************** PP

                             EEE-SSSEE..EEEEE-S CS
                      B3  82 Fkldgrsefelvvkvfrk 99 
                             F   ++++ +l+++++r+
  SapurV1A.0289s0180.1.p 219 FI--WNEKNQLLLGIRRA 234
                             **..8899999****997 PP
2Auxin_resp114.69.1e-38259342183
              Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                             aahaa+t+s F+++YnPras+seFv+++ k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+ dldp rWpnS Wrs+k
  SapurV1A.0289s0180.1.p 259 AAHAAATNSRFTIFYNPRASPSEFVIPLVKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGICDLDPARWPNSYWRSVK 342
                             79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.27E-47118262IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.6E-40125248IPR015300DNA-binding pseudobarrel domain
CDDcd100171.17E-21132233No hitNo description
PfamPF023623.0E-21133234IPR003340B3 DNA binding domain
SMARTSM010191.2E-23133235IPR003340B3 DNA binding domain
PROSITE profilePS5086312.365133235IPR003340B3 DNA binding domain
PfamPF065074.7E-33259342IPR010525Auxin response factor
SuperFamilySSF542771.18E-6768851No hitNo description
PfamPF023092.3E-5770859IPR033389AUX/IAA domain
PROSITE profilePS5174521.781777861IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 941 aa     Download sequence    Send to blast
MRLSSSSSST TGFNQVTREG DKKCLNSELW HACAGPLVSL PHVGSRVVYF PQGHSEQVAA  60
STNKEVDAHF PNYPSLPPQL ICQLHNVTMH ADVETDEVCA QMTLQPLSQE DQKDAYLLPA  120
ELGTASKQPS NYFCKTLTAS DTSTHGGFSV PRRAAEKVFP PLDYALTPPA QELIARDLHD  180
NEWKFRHIFR GQPKRHLLTT GWSVFVSAKR LVAGDSVLFI WNEKNQLLLG IRRATRPQTV  240
MPSSVLSSDS MHIGLLAAAA HAAATNSRFT IFYNPRASPS EFVIPLVKYI KAVYHTRVSV  300
GMRFRMLFET EESSVRRYMG TITGICDLDP ARWPNSYWRS VKVGWDESTA GERQPRVSLW  360
EIEPLTTFPM YPSAFPLRLK RPWPSGLPSL HAGLKDDDLS INSPMMWLQG GVGDLGAHSL  420
NFQNFGVAPW IQPRFDASMP ALQRDVYQTM AAASLQEMRT VESSKLASQS LLQFQQYQNL  480
STGPAALLQR QMLQQSNIQN AFHQNFQENQ ASTQAQLLQQ QLQQRSQYTD QQQQQQRHQP  540
PQQQLQQPKQ LNELSGQQQI PNGISALPHL TSVAPSHSPS LQPIPSQCQQ QAFSESLGNP  600
IAAPGVSSAP SIIGSLPQDR CHLLNSNGSN PVCASALLPK QVAIGPQLLS GAATGVLSQV  660
EQLGTTQSAV SDFATLLAPF SGREYSTYEG ANDPQNNLLF GVNIDSSTFM LQHGISNLRN  720
IGTENHPLSM PFTTSTFTSA TGSEIPLASD MTASSCVDES GFLQPSENVD QANPSTRTFL  780
KVQKSGSYGR SLDISKFSSY DELRGELARL FGLEGQLEDP QRSGWQLVFV DRENDVLLLG  840
DDPWQEFLNN VWYIKILSPL EVQQMGKEGL TPAASVPSQK LSNSTSDGYM NRQDFRNSSN  900
PDGYMSRQDF RNSSNPDGYM NRQDFRNSSN GIAYMGSLDY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1582236348388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0289s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1471320.0EF147132.1 Populus trichocarpa clone WS01228_B04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024451058.10.0auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A2K2BDW20.0A0A2K2BDW2_POPTR; Auxin response factor
STRINGPOPTR_0002s05590.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]