PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0288s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 313aa    MW: 33967.9 Da    PI: 7.5623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0288s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.30.00051125147123
                             EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                             y+C+ C++sF++   L  H  +H
  SapurV1A.0288s0060.1.p 125 YECKTCNRSFPSFQALGGHRASH 147
                             99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.2E-13124149IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-8124147No hitNo description
SMARTSM003550.06125147IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.658125152IPR007087Zinc finger, C2H2
PROSITE patternPS000280127147IPR007087Zinc finger, C2H2
SuperFamilySSF576671.4E-8202229No hitNo description
PfamPF139121.3E-11206230IPR007087Zinc finger, C2H2
SMARTSM003550.058207229IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.452207234IPR007087Zinc finger, C2H2
PROSITE patternPS000280209229IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDMEAQDEFM GSNDLTQIVK GKRTKRRGSS SSPYKVMTST SSSGCGGGGG VLIEEYGSTS  60
SPTTSSEVCE RTEEEEDMAN CLILLAQGDN RRPKQIHENK VEKFSAGKFP DMPAPTINKA  120
GSLVYECKTC NRSFPSFQAL GGHRASHKKP RTTVLGERKG IAAASMEDLD DCQLNKRSPY  180
PSLSLQIPHT NHSNVNKGFQ ANKAKVHECS ICGSEFMSGQ ALGGHMRRHR TNTGAANQAS  240
MVSADSASAT TEYSTIYADH HHPIKPRNIL ALDLNLPAPP EDDQHPRESK FQFSSAQQAL  300
VFSSPTLVDC HY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0288s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002313544.11e-159zinc finger protein ZAT5
TrEMBLB9HQP71e-158B9HQP7_POPTR; C2H2 family protein
STRINGPOPTR_0009s01020.11e-159(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.18e-48C2H2 family protein