PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0285s0240.5.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 631aa    MW: 69423.5 Da    PI: 6.23
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0285s0240.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix401e-122454287
                trihelix 42 gferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                            g++rs+k+Ckek+en++k+yk++keg+ +r++++  ++++f+qlea
  SapurV1A.0285s0240.5.p  2 GYRRSAKKCKEKFENVHKYYKRTKEGRAGRQDGR--SYRFFSQLEA 45
                            9****************************86555..5*******85 PP
2trihelix107.49.8e-34373458187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW+k evlaLi++r+ +e+r++++  k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a
  SapurV1A.0285s0240.5.p 373 RWPKPEVLALIKLRSGLETRYQEAGPKGPLWEEISAGMLRLGYKRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 458
                             8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138378.8E-8246No hitNo description
SuperFamilySSF819951.33E-7282356No hitNo description
PROSITE profilePS500907.201366430IPR017877Myb-like domain
PfamPF138371.3E-22372459No hitNo description
CDDcd122033.56E-30372437No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MGYRRSAKKC KEKFENVHKY YKRTKEGRAG RQDGRSYRFF SQLEALQNTG GGGVSASIGN  60
MVSGVAPQLI GPATASSLDV APVSVGIPMP TRTPPSSQVP QPASNIGSMF PPDLGAAVAP  120
TAAAGSRPVG ISFSSNESSS FQSSEDDDDD EDVGILGGQT SAMGAGTSRK RKRASLSSSK  180
AEIHRMMGFF EGLMKQVMQK QEAMQRRFLE AIEKREQDRM IRDEAWKRQE MARLSREHEI  240
MAQERSISAS RDAAIVAFLQ KITGQTIHLP TPVSIAPPVS QPPPPPQPRQ VQIAPLVTVS  300
TQPPPQPQPQ PMPPQSQVTP QQNKQQPQPL PQQQVHHHHQ PPSLSSNIVM AVPEQQISPQ  360
EFGSGGSEAA SSRWPKPEVL ALIKLRSGLE TRYQEAGPKG PLWEEISAGM LRLGYKRSSK  420
RCKEKWENIN KYFKKVKESN KKRPEDAKTC PYFHELDALY RNKILGNSST GFDSQNRPQE  480
SLILDPMPPP MQQAVPQQTI QATELHNKNG ASADAQASNT VLAGEGNGGA EKKPEDTVKE  540
LMKQQGTQQQ QQQQQLMVDD YDKMEEGDSE NVNEDEYDEE DDGDEDDEED EALQEERKMA  600
YKIEFQRQNT SNATNGGGSG APPSFLAMVQ *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0285s0240.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494300.0AC149430.1 Populus trichocarpa clone Pop1-116F13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038056.10.0PREDICTED: trihelix transcription factor GTL1-like isoform X1
TrEMBLG8G9Q90.0G8G9Q9_POPCN; GTL1
STRINGPOPTR_0001s45870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.16e-47Trihelix family protein