PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0285s0240.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family Trihelix
Protein Properties Length: 680aa    MW: 73427.5 Da    PI: 9.5654
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0285s0240.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix98.75.1e-31104188187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW++qe+laL+++r+em+ ++r++ lk+plWe+vs+k++e g++rs+k+Ckek+en++k+yk++keg+ +r++++  ++++f+qlea
  SapurV1A.0285s0240.3.p 104 RWPRQETLALLQIRSEMDAAFRDATLKGPLWEDVSRKLAEMGYRRSAKKCKEKFENVHKYYKRTKEGRAGRQDGR--SYRFFSQLEA 188
                             8*********************************************************************86555..5*******85 PP
2trihelix107.21.1e-33516601187
                trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                             rW+k evlaLi++r+ +e+r++++  k+plWee+s+ m + g++rs+k+Ckekwen+nk++kk+ke++kkr +e+ +tcpyf++l+a
  SapurV1A.0285s0240.3.p 516 RWPKPEVLALIKLRSGLETRYQEAGPKGPLWEEISAGMLRLGYKRSSKRCKEKWENINKYFKKVKESNKKR-PEDAKTCPYFHELDA 601
                             8*********************************************************************8.99999********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0051101163IPR001005SANT/Myb domain
CDDcd122031.96E-29103168No hitNo description
PfamPF138372.0E-21103189No hitNo description
PROSITE profilePS500906.748103161IPR017877Myb-like domain
PROSITE profilePS500907.201509573IPR017877Myb-like domain
SMARTSM007170.023513575IPR001005SANT/Myb domain
PfamPF138371.5E-22515602No hitNo description
CDDcd122031.06E-30515580No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 680 aa     Download sequence    Send to blast
MQQGGGERGS SQPPYAASQP QGDMALPAPS TSAALATHMQ QHQVVEEASP ISSRPPATAA  60
TTSGGGGGAV NLDEFMRLSS GGGAEEDIGG EDADRTGGIA SGNRWPRQET LALLQIRSEM  120
DAAFRDATLK GPLWEDVSRK LAEMGYRRSA KKCKEKFENV HKYYKRTKEG RAGRQDGRSY  180
RFFSQLEALQ NTGGGGVSAS IGNMVSGVAP QLIGPATASS LDVAPVSVGI PMPTRTPPSS  240
QVPQPASNIG SMFPPDLGAA VAPTAAAGSR PVGISFSSNE SSSFQSSEDD DDDEDVGILG  300
GQTSAMGAGT SRKRKRASLS SSKAEIHRMM GFFEGLMKQV MQKQEAMQRR FLEAIEKREQ  360
DRMIRDEAWK RQEMARLSRE HEIMAQERSI SASRDAAIVA FLQKITGQTI HLPTPVSIAP  420
PVSQPPPPPQ PRQVQIAPLV TVSTQPPPQP QPQPMPPQSQ VTPQQNKQQP QPLPQQQVHH  480
HHQPPSLSSN IVMAVPEQQI SPQEFGSGGS EAASSRWPKP EVLALIKLRS GLETRYQEAG  540
PKGPLWEEIS AGMLRLGYKR SSKRCKEKWE NINKYFKKVK ESNKKRPEDA KTCPYFHELD  600
ALYRNKILGN SSTGFDSQNR PQESLILDPM PPPMQQAVPQ QTIQATELHN KNGASADAQA  660
SNTVLAGEGN GGAEKKKTP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0285s0240.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1494300.0AC149430.1 Populus trichocarpa clone Pop1-116F13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300534.30.0trihelix transcription factor GTL1 isoform X2
TrEMBLG8G9Q90.0G8G9Q9_POPCN; GTL1
STRINGPOPTR_0001s45870.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.11e-46Trihelix family protein