PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0285s0040.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Protein Properties

Length: 448aa MW: 49219 Da PI: 9.0488

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0285s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	101.2	6.1e-32	110	214	1	99
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F+ SapurV1A.0285s0040.1.p 110 FDKVVTPSDVGKLNRLVIPKQHAEKYlpldSSSNEKGLLLNFEDRNGKDWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQ 196 89**************************66677899*********************************************** PP E-.SS.SEE..EEEEE-S CS B3 84 ld.gr.sefelvvkvfrk 99 + g+ + +l++ ++r+ SapurV1A.0285s0040.1.p 197 RGvGElGKDRLYINWRRR 214 666999999999999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	4.6E-41	101	220	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.27E-29	107	198	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.68E-25	108	197	No hit	No description
SMART	SM01019	7.3E-23	110	215	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	14.945	110	215	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.7E-29	110	214	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MEFGTGFSEG DQMSRGKGFP FSSYSSSNSY PSSSSSQQKN QFVLDQIYEN HQMGSWLGNR 60 YEQVDQDTSR FSESVAVNAA KPDLMDVNDE EEGGRGESSS ARVIEKEHMF DKVVTPSDVG 120 KLNRLVIPKQ HAEKYLPLDS SSNEKGLLLN FEDRNGKDWR FRYSYWNSSQ SYVMTKGWSR 180 FVKEKKLDAG DVVSFQRGVG ELGKDRLYIN WRRRPDAPAN PSRHQRYFHN HHFSAIPWSP 240 LLMSPPAVPV LPRDHLHLSN PKRNACYKVG GGSYGYGYGN YTNVVSPCSS PGSVLYMASS 300 AGAGAGAAVA PAPQQVGMGM VQWQLGGGGA VEPVVYESVP VIQGKAAAKR LRLFGVNMDC 360 PISDQSNDYG HKFSSTTAAA AKLPHNATIS LQPTPQLAPQ SLQHPFHQLR LYRGTPLAEM 420 TPSTTQFLQK GKSLSSPSSS MSLDLDI*

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MEFGTGFSEG DQMSRGKGFP FSSYSSSNSY PSSSSSQQKN QFVLDQIYEN HQMGSWLGNR  60
YEQVDQDTSR FSESVAVNAA KPDLMDVNDE EEGGRGESSS ARVIEKEHMF DKVVTPSDVG  120
KLNRLVIPKQ HAEKYLPLDS SSNEKGLLLN FEDRNGKDWR FRYSYWNSSQ SYVMTKGWSR  180
FVKEKKLDAG DVVSFQRGVG ELGKDRLYIN WRRRPDAPAN PSRHQRYFHN HHFSAIPWSP  240
LLMSPPAVPV LPRDHLHLSN PKRNACYKVG GGSYGYGYGN YTNVVSPCSS PGSVLYMASS  300
AGAGAGAAVA PAPQQVGMGM VQWQLGGGGA VEPVVYESVP VIQGKAAAKR LRLFGVNMDC  360
PISDQSNDYG HKFSSTTAAA AKLPHNATIS LQPTPQLAPQ SLQHPFHQLR LYRGTPLAEM  420
TPSTTQFLQK GKSLSSPSSS MSLDLDI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5os9_A	6e-64	105	215	3	114	B3 domain-containing transcription factor NGA1
5os9_B	6e-64	105	215	3	114	B3 domain-containing transcription factor NGA1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269\|PubMed:16603651}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0285s0040.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151955	0.0	AC151955.2 Populus trichocarpa clone Pop1-041G20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006370733.1	0.0	B3 domain-containing transcription factor NGA1
Swissprot	O82799	6e-76	NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBL	U5GXP9	0.0	U5GXP9_POPTR; Uncharacterized protein
STRING	POPTR_0001s45650.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2338	33	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G46870.1	6e-72	B3 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0285s0040.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Lee BH, et al. The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs. Plant Mol. Biol., 2015. 89(4-5): p. 529-38 [PMID:26433582] Lozano-Sotomayor P, et al. Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana. Plant J., 2016. 88(3): p. 437-451 [PMID:27402171] Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL Active suppression of a leaf meristem orchestrates determinate leaf growth. Elife, 2017. [PMID:27710768] Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V DNA recognition by Arabidopsis transcription factors ABI3 and NGA1. FEBS J., 2018. 285(21): p. 4041-4059 [PMID:30183137] Sato H, et al. Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187 [PMID:30397148]