PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0283s0280.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CPP
Protein Properties Length: 476aa    MW: 51087.3 Da    PI: 7.9016
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0283s0280.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR48.22.1e-15443140
                     TCR  1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                            k++kgCnCk+s ClkkYCeCf+ + +Cse+CkC +CkN e
  SapurV1A.0283s0280.3.p  4 KHNKGCNCKRSGCLKKYCECFQGNIFCSENCKCLECKNFE 43
                            589***********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5163419.88144IPR005172CRC domain
SMARTSM011148.2E-18445IPR033467Tesmin/TSO1-like CXC domain
PfamPF036382.4E-12742IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MVGKHNKGCN CKRSGCLKKY CECFQGNIFC SENCKCLECK NFEGNDERRA LFHGSPHATA  60
YAQQATNAAI SGAIGSSGYV TTLVSKKRKS EELFGIPTKD QSAHCTSKFS QGNTLRNSAA  120
FSSPLSVPIS RTANGAVLGS MKPTYRSPLA GVLQPQFVKE LCTLLVMISG NTTEALAGKI  180
GKVDTRSDRE NIETYSASPT QEKESNLKGW NAIEPMPYDC LNGNKAEKDG SIDSGDVENA  240
RPSSPDIDLM CHEEEVMFME MGSPTGVAQH CQSKTQKSDD GYECSQLHAE QEKIILTSFL  300
DILNRVSTYG NIKACQSGDQ KEPAVRDTVK TGIEAGNHRN GYHKRGVATL VLNGVHPNKA  360
ATLSVPVELT ERSAIKAGIQ MGSHKDHSNG TKQSPVMVNS ASTVFPLMAV SLAQQESAER  420
GTKTTRTDIG NHNGYDNGTV KSPAPAPYAS NTDLPVKAAS PVENLERIPA GKNWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A1e-1445383132Protein lin-54 homolog
5fd3_B1e-1445383132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0283s0280.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024445729.10.0protein tesmin/TSO1-like CXC 6
TrEMBLA0A2K1WVJ10.0A0A2K1WVJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0018s00600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.13e-62Tesmin/TSO1-like CXC domain-containing protein