PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0283s0280.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CPP
Protein Properties Length: 664aa    MW: 71835.9 Da    PI: 8.141
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0283s0280.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.23.7e-14108147242
                     TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                             + k+CnCk+s Clk+YCeCfaag +C+  C+C +C+N+ e+
  SapurV1A.0283s0280.2.p 108 KPKQCNCKNSMCLKLYCECFAAGIHCNG-CNCVNCRNNVEN 147
                             5699************************.********9875 PP
2TCR47.63.3e-15192231140
                     TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                             k++kgCnCk+s ClkkYCeCf+ + +Cse+CkC +CkN e
  SapurV1A.0283s0280.2.p 192 KHNKGCNCKRSGCLKKYCECFQGNIFCSENCKCLECKNFE 231
                             589***********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.1E-15107147IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.816108232IPR005172CRC domain
PfamPF036382.3E-11110144IPR005172CRC domain
SMARTSM011148.2E-18192233IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.7E-12195230IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MEQSETVTEY TPKKLAPQKL DFTARICRTA PVNVPPQTQQ VHVSLQTQTP PMPEMPPPPY  60
QARLVSQHEA AAAAAQRIPH PVHKISAMPR GKQDSPGSRL ANDGTPKKPK QCNCKNSMCL  120
KLYCECFAAG IHCNGCNCVN CRNNVENEKE RKEAVEATLQ RNPNAFRPKI ASSPHGSQDT  180
TEDVQEVQMV GKHNKGCNCK RSGCLKKYCE CFQGNIFCSE NCKCLECKNF EGNDERRALF  240
HGSPHATAYA QQATNAAISG AIGSSGYVTT LVSKKRKSEE LFGIPTKDQS AHCTSKFSQG  300
NTLRNSAAFS SPLSVPISRT ANGAVLGSMK PTYRSPLAGV LQPQFVKELC TLLVMISGNT  360
TEALAGKIGK VDTRSDRENI ETYSASPTQE KESNLKGWNA IEPMPYDCLN GNKAEKDGSI  420
DSGDVENARP SSPDIDLMCH EEEVMFMEMG SPTGVAQHCQ SKTQKSDDGY ECSQLHAEQE  480
KIILTSFLDI LNRVSTYGNI KACQSGDQKE PAVRDTVKTG IEAGNHRNGY HKRGVATLVL  540
NGVHPNKAAT LSVPVELTER SAIKAGIQMG SHKDHSNGTK QSPVMVNSAS TVFPLMAVSL  600
AQQESAERGT KTTRTDIGNH NGYDNGTVKS PAPAPYASNT DLPVKAASPV ENLERIPAGK  660
NWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-3210624110132Protein lin-54 homolog
5fd3_B3e-3210624110132Protein lin-54 homolog
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0283s0280.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026609.10.0PREDICTED: protein tesmin/TSO1-like CXC 6 isoform X1
TrEMBLA0A2K1WVJ10.0A0A2K1WVJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0018s00600.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.12e-96Tesmin/TSO1-like CXC domain-containing protein