PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0283s0280.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family CPP
Protein Properties Length: 668aa    MW: 72244.3 Da    PI: 8.141
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0283s0280.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR44.23.7e-14112151242
                     TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                             + k+CnCk+s Clk+YCeCfaag +C+  C+C +C+N+ e+
  SapurV1A.0283s0280.1.p 112 KPKQCNCKNSMCLKLYCECFAAGIHCNG-CNCVNCRNNVEN 151
                             5699************************.********9875 PP
2TCR47.63.3e-15196235140
                     TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                             k++kgCnCk+s ClkkYCeCf+ + +Cse+CkC +CkN e
  SapurV1A.0283s0280.1.p 196 KHNKGCNCKRSGCLKKYCECFQGNIFCSENCKCLECKNFE 235
                             589***********************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011142.1E-15111151IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.816112236IPR005172CRC domain
PfamPF036382.3E-11114148IPR005172CRC domain
SMARTSM011148.2E-18196237IPR033467Tesmin/TSO1-like CXC domain
PfamPF036383.7E-12199234IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 668 aa     Download sequence    Send to blast
MEQSETVTEY TPKKLAPQKL DFTARICRTA PVNVPPQTQQ VHVSLQTQTP PMPEMPPPPY  60
QARLVSQHEA AAAAAQRIPH PVHKISAMPR GSSFSKQDSP GSRLANDGTP KKPKQCNCKN  120
SMCLKLYCEC FAAGIHCNGC NCVNCRNNVE NEKERKEAVE ATLQRNPNAF RPKIASSPHG  180
SQDTTEDVQE VQMVGKHNKG CNCKRSGCLK KYCECFQGNI FCSENCKCLE CKNFEGNDER  240
RALFHGSPHA TAYAQQATNA AISGAIGSSG YVTTLVSKKR KSEELFGIPT KDQSAHCTSK  300
FSQGNTLRNS AAFSSPLSVP ISRTANGAVL GSMKPTYRSP LAGVLQPQFV KELCTLLVMI  360
SGNTTEALAG KIGKVDTRSD RENIETYSAS PTQEKESNLK GWNAIEPMPY DCLNGNKAEK  420
DGSIDSGDVE NARPSSPDID LMCHEEEVMF MEMGSPTGVA QHCQSKTQKS DDGYECSQLH  480
AEQEKIILTS FLDILNRVST YGNIKACQSG DQKEPAVRDT VKTGIEAGNH RNGYHKRGVA  540
TLVLNGVHPN KAATLSVPVE LTERSAIKAG IQMGSHKDHS NGTKQSPVMV NSASTVFPLM  600
AVSLAQQESA ERGTKTTRTD IGNHNGYDNG TVKSPAPAPY ASNTDLPVKA ASPVENLERI  660
PAGKNWS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A3e-3211024510132Protein lin-54 homolog
5fd3_B3e-3211024510132Protein lin-54 homolog
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0283s0280.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011026609.10.0PREDICTED: protein tesmin/TSO1-like CXC 6 isoform X1
SwissprotQ9SZD11e-117TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A2K1WVJ10.0A0A2K1WVJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0018s00600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.17e-96Tesmin/TSO1-like CXC domain-containing protein