PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0281s0250.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C2H2
Protein Properties Length: 304aa    MW: 33798.9 Da    PI: 8.5823
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0281s0250.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.70.000185476123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C++ F++   L  H+++H
  SapurV1A.0281s0250.1.p 54 YSCSFCKREFRSAQALGGHMNVH 76
                            99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.22E-65181No hitNo description
SMARTSM003550.0065476IPR015880Zinc finger, C2H2-like
PfamPF139125.3E-65477IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.245481IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEQAQYWLWM KRKQLLKPQL PASMKSMSGS WEEKAFTEDS SGHLGGSIWP PRSYSCSFCK  60
REFRSAQALG GHMNVHRRDR ARLKQSLSPH IYVFQHQNHI QSSLKSLESH FPSDQVCTLD  120
NYYDLDPKLS VSSATNIAST TLSSSRVSTL SNQENLSEHA FASPPSSSLV QEQHKGYPYL  180
HNNLSGSDHS LSIRLRSKPE AERNQGEVNV TCLKHDKFVA TDIFMGPGSA INIHSLSSPG  240
SCGNEAISCK RPRTNVSVLS LLVKPRPSDR YNILQSGETR PDSSSNEGID LELRLGETPE  300
VIK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-134976229superman protein
2l1o_A2e-134976229Transcriptional regulator SUPERMAN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0281s0250.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002316269.10.0zinc finger protein 10
TrEMBLB9HT740.0B9HT74_POPTR; Uncharacterized protein
STRINGPOPTR_0010s20740.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17763078
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.14e-26zinc-finger protein 10