PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0281s0190.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | LBD | ||||||||
Protein Properties | Length: 219aa MW: 24197.2 Da PI: 4.5042 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 124.9 | 4.1e-39 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 +C aCk+lrrkC+++Cv+apyf+ +q +++fa+vhk+FGasnv+kll +lp ++r da+ ++ yeA ar+rdP+yG+v+ i++lqqq SapurV1A.0281s0190.1.p 7 SCGACKFLRRKCTTECVFAPYFCYDQaAAHFAAVHKVFGASNVSKLLLHLPVHNRGDAAITISYEALARMRDPIYGCVAQIFALQQQ 93 6************************978*********************************************************** PP DUF260 87 leqlkaelallkee 100 +++l++e+++l+++ SapurV1A.0281s0190.1.p 94 VASLQEEIEVLESQ 107 ********999877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.253 | 6 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.1E-37 | 7 | 105 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 219 aa Download sequence Send to blast |
MTGLGSSCGA CKFLRRKCTT ECVFAPYFCY DQAAAHFAAV HKVFGASNVS KLLLHLPVHN 60 RGDAAITISY EALARMRDPI YGCVAQIFAL QQQVASLQEE IEVLESQMAS LTVGVAGFES 120 SQTISNPDCE MLFSFQQDAM DTQYYQNPES AQPNHSGYTA GNQTFDGQMN APLPPLYGWE 180 DQNIFCNSHP RPLERLLEEV DKEIFTYCSW PDSGNIII* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 3 | 117 | 7 | 120 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 3 | 117 | 7 | 120 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0281s0190.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002316271.2 | 1e-155 | LOB domain-containing protein 29 | ||||
Swissprot | Q9LHS8 | 6e-57 | LBD33_ARATH; LOB domain-containing protein 33 | ||||
TrEMBL | B9HT79 | 1e-153 | B9HT79_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s20800.1 | 1e-154 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9196 | 32 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06080.1 | 9e-48 | LOB domain-containing protein 33 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0281s0190.1.p |
Publications ? help Back to Top | |||
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