PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0277s0070.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | C2H2 | ||||||||
Protein Properties | Length: 369aa MW: 43160.8 Da PI: 8.3497 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 20.8 | 1.1e-06 | 66 | 87 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C++Cg sF+ + +L +H+++H SapurV1A.0277s0070.1.p 66 TCEKCGASFKKPAYLIQHMQSH 87 6*******************99 PP | |||||||
2 | zf-C2H2 | 15.4 | 5.1e-05 | 93 | 117 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 +kC+ dC+ s++rk++L+rH+ H SapurV1A.0277s0070.1.p 93 FKCSydDCHASYRRKDHLTRHLLQH 117 89*******************9887 PP | |||||||
3 | zf-C2H2 | 18.6 | 5.1e-06 | 122 | 147 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 + C+ +C++ F +snLkrH r H SapurV1A.0277s0070.1.p 122 FNCQneNCNREFVYPSNLKRHVRElH 147 679999*****************988 PP | |||||||
4 | zf-C2H2 | 17.4 | 1.2e-05 | 162 | 186 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ Cgk F +s L++H +H SapurV1A.0277s0070.1.p 162 YVCQepGCGKAFGYPSKLRKHEDSH 186 99*******************9888 PP | |||||||
5 | zf-C2H2 | 16.1 | 3.1e-05 | 254 | 278 | 2 | 23 |
EET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCp..dCgksFsrksnLkrHirt.H 23 kC+ dC +Fs+k nL++H + H SapurV1A.0277s0070.1.p 254 KCHfkDCQHTFSTKTNLNQHVKAvH 278 7*******************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 8.871 | 21 | 48 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 24 | 21 | 43 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.51E-10 | 64 | 117 | No hit | No description |
PROSITE profile | PS50157 | 13.048 | 65 | 92 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0073 | 65 | 87 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.9E-9 | 66 | 91 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 67 | 87 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.2E-9 | 92 | 119 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.93 | 93 | 122 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.008 | 93 | 117 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 95 | 117 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 9.6E-6 | 120 | 144 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.84E-7 | 122 | 186 | No hit | No description |
PROSITE profile | PS50157 | 12.57 | 122 | 152 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.029 | 122 | 147 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 124 | 147 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 1.4E-9 | 157 | 186 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 11.198 | 162 | 191 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.005 | 162 | 186 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 164 | 186 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.8 | 194 | 219 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 196 | 219 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 17 | 222 | 243 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 3.5E-6 | 235 | 290 | No hit | No description |
PROSITE profile | PS50157 | 11.946 | 253 | 283 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0033 | 253 | 278 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 2.2E-4 | 254 | 281 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 255 | 278 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 11 | 284 | 310 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 286 | 310 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MMEEGQAEKE RPVIFRDIRR YYCDYCGICR SKKSLITSHV LTHHKEEMDE ERVDGDEGKE 60 GLKSNTCEKC GASFKKPAYL IQHMQSHSLE RPFKCSYDDC HASYRRKDHL TRHLLQHEGK 120 LFNCQNENCN REFVYPSNLK RHVRELHDER SPSNSFGGEK QYVCQEPGCG KAFGYPSKLR 180 KHEDSHVSLD HVEAMCLEPG CMKHFSNKEC LKAHIQSCHQ YINCDICGTR QLKKNIKRHL 240 RTHEPASDST ERIKCHFKDC QHTFSTKTNL NQHVKAVHLE HRPFLCGFPG CDMRFSYKHV 300 RDNHEKSGLH VYTPGDFVES DQQFRSKPRG GRKRNIPTVE MLIRKRVTPP AKSDEYHSWL 360 HEMETENQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gli_A | 4e-16 | 41 | 182 | 19 | 149 | PROTEIN (FIVE-FINGER GLI) |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential protein (PubMed:22353599). Isoform 1 is a transcription activator the binds both 5S rDNA and 5S rRNA and stimulates the transcription of 5S rRNA gene (PubMed:12711688, PubMed:22353599). Isoform 1 regulates 5S rRNA levels during development (PubMed:22353599). {ECO:0000269|PubMed:12711688, ECO:0000269|PubMed:22353599}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0277s0070.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006376244.1 | 0.0 | transcription factor IIIA | ||||
Swissprot | Q84MZ4 | 1e-141 | TF3A_ARATH; Transcription factor IIIA | ||||
TrEMBL | U5FVV9 | 0.0 | U5FVV9_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0013s11300.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3069 | 33 | 70 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72050.2 | 1e-144 | transcription factor IIIA |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0277s0070.1.p |