PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0269s0230.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | YABBY | ||||||||
Protein Properties | Length: 217aa MW: 24220.4 Da PI: 5.1152 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 196 | 1.6e-60 | 6 | 170 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlks 84 ++ + ++ +CyvqC+fC+til+vsvP +s+++vvtv CGhC+sllsvnl+k s ll++ sh d++ ke l ++ + SapurV1A.0269s0230.4.p 6 HLLDPPDLICYVQCGFCTTILLVSVPCSSSSTVVTVICGHCSSLLSVNLMKISflpfSLLTSLSH-DHEQKELLCPDEVD------- 84 667899*********************************************99444445555555.33333333332222....... PP YABBY 85 nvekeesastsvsseklsenedeevprvpp....virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 ++e +t++s +s+++de++ ++ p +++PPekrqr+Psayn+fikeei+r+k++nP+++h+eafs+aaknWah P++h SapurV1A.0269s0230.4.p 85 ---AQEGLETQNSFIVISSDNDEDIDKINPvnrvINKPPEKRQRAPSAYNCFIKEEIRRLKSENPNMAHKEAFSTAAKNWAHCPHVH 168 ...2222223333333344444444444331112789************************************************** PP YABBY 168 fg 169 + SapurV1A.0269s0230.4.p 169 CK 170 75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 7.3E-61 | 11 | 169 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 1.06E-8 | 112 | 165 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.2E-5 | 118 | 165 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MSTLNHLLDP PDLICYVQCG FCTTILLVSV PCSSSSTVVT VICGHCSSLL SVNLMKISFL 60 PFSLLTSLSH DHEQKELLCP DEVDAQEGLE TQNSFIVISS DNDEDIDKIN PVNRVINKPP 120 EKRQRAPSAY NCFIKEEIRR LKSENPNMAH KEAFSTAAKN WAHCPHVHCK DDGESIGLED 180 ENSTWSSVAA EVNIESKGFH ERKVPRDYMW AKTPFE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0269s0230.4.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011045290.1 | 1e-144 | PREDICTED: axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 6e-70 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A2K1YNQ7 | 1e-145 | A0A2K1YNQ7_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s05220.1 | 1e-146 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 3e-56 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0269s0230.4.p |
Publications ? help Back to Top | |||
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