PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0269s0230.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | YABBY | ||||||||
Protein Properties | Length: 218aa MW: 24362.5 Da PI: 5.1152 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 188.7 | 2.9e-58 | 6 | 171 | 2 | 169 |
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlks 84 ++ + ++ +CyvqC+fC+til+vsvP +s+++vvtv CGhC+sllsvnl+k s ll++ sh d++ ke l ++ + SapurV1A.0269s0230.3.p 6 HLLDPPDLICYVQCGFCTTILLVSVPCSSSSTVVTVICGHCSSLLSVNLMKISflpfSLLTSLSH-DHEQKELLCPDEVD------- 84 667899*********************************************99444445555555.33333333332222....... PP YABBY 85 nvekeesastsvsseklsenedeevprvpp....virPPekrqrvPsaynrfi.keeiqrikasnPdishreafsaaaknWahfPki 166 ++e +t++s +s+++de++ ++ p +++PPekrqr+Psayn+fi +eei+r+k++nP+++h+eafs+aaknWah P++ SapurV1A.0269s0230.3.p 85 ---AQEGLETQNSFIVISSDNDEDIDKINPvnrvINKPPEKRQRAPSAYNCFInREEIRRLKSENPNMAHKEAFSTAAKNWAHCPHV 168 ...2222223333333344444444444331112789****************669******************************* PP YABBY 167 hfg 169 h + SapurV1A.0269s0230.3.p 169 HCK 171 *75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.0E-58 | 11 | 170 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 7.85E-6 | 112 | 166 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MSTLNHLLDP PDLICYVQCG FCTTILLVSV PCSSSSTVVT VICGHCSSLL SVNLMKISFL 60 PFSLLTSLSH DHEQKELLCP DEVDAQEGLE TQNSFIVISS DNDEDIDKIN PVNRVINKPP 120 EKRQRAPSAY NCFINREEIR RLKSENPNMA HKEAFSTAAK NWAHCPHVHC KDDGESIGLE 180 DENSTWSSVA AEVNIESKGF HERKVPRDYM WAKTPFE* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0269s0230.3.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269|PubMed:10601041, ECO:0000269|PubMed:12183380, ECO:0000269|PubMed:12183381}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011045290.1 | 1e-141 | PREDICTED: axial regulator YABBY 4 | ||||
Swissprot | Q9LDT3 | 1e-67 | YAB4_ARATH; Axial regulator YABBY 4 | ||||
TrEMBL | A0A3N7H7S4 | 1e-146 | A0A3N7H7S4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0010s05220.1 | 1e-144 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G23420.1 | 5e-54 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0269s0230.3.p |
Publications ? help Back to Top | |||
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