PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0267s0240.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 542aa    MW: 60630.4 Da    PI: 4.6876
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0267s0240.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS439.62.3e-1341725412374
                    GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 
                             ++lL+e A+a+s+g+ e+a++l+++l++l+s +gdp qR+aay++e+Laar+a+s++ lykal+++e +   ss++laa+++++e++
  SapurV1A.0267s0240.4.p 172 RQLLFESANAISEGNIEKASTLINELRQLVSIQGDPSQRIAAYMVEGLAARMAGSGKYLYKALKCKEPP---SSDRLAAMQILFEIC 255
                             689*****************************************************************9...9************** PP

                    GRAS  89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173
                             P++kf++++aN a+ ea++ge+rvHiiDfdi+qG Q+++L+q+La+ +++ p+lR+Tgv++p+s+  +   l+ +g+rL+k+Ae+l+
  SapurV1A.0267s0240.4.p 256 PCFKFGFMAANGAMIEAFKGERRVHIIDFDINQGSQYITLIQTLANVQGKLPHLRLTGVDDPDSVqrHVGGLRIIGQRLEKLAEALK 342
                             ***************************************************************99888999**************** PP

                    GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260
                             v+fef++ va++++ +++++L+ kpgEal+Vn+++qlh+++desvs+ +erd++L++ ksl+Pk+v+vveq++++n+++F+ rf+ea
  SapurV1A.0267s0240.4.p 343 VSFEFHA-VASKTSLVNPSMLNRKPGEALIVNFAFQLHHMPDESVSTVNERDQLLRMAKSLNPKLVTVVEQDVNTNTAPFFPRFTEA 428
                             *******.7****************************************************************************** PP

                    GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347
                              +yysa+fdsl+++lpres++r +vE+++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF + +++ ++++ ++ l++++ ++
  SapurV1A.0267s0240.4.p 429 YNYYSAVFDSLDVTLPRESQDRLNVEKQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFISCSITPNVVDMIRILIKEYCDR 515
                             *************************************************************************************66 PP

                    GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374
                              y++++e g+l +gW+d++L+++SaW+
  SapurV1A.0267s0240.4.p 516 -YMLKQEAGALHFGWEDKSLIVASAWK 541
                             .*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.167145522IPR005202Transcription factor GRAS
PfamPF035147.9E-132172541IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MYMTDSYSSE SYEKYFLDSP TEELIQPSSS GISGNSAPPQ GTSSYQPRKN SGSSMSPQDP  60
YDTCFTLTTP CDGYQFNSES DYMNIESPDP LDYDEYKMKL KLQELERALL NDNDEDGMFG  120
NSQSLEMDGE WSDPIQNGML HDSPKESSSS DSSLSSISNN KEVSQLSPQT PRQLLFESAN  180
AISEGNIEKA STLINELRQL VSIQGDPSQR IAAYMVEGLA ARMAGSGKYL YKALKCKEPP  240
SSDRLAAMQI LFEICPCFKF GFMAANGAMI EAFKGERRVH IIDFDINQGS QYITLIQTLA  300
NVQGKLPHLR LTGVDDPDSV QRHVGGLRII GQRLEKLAEA LKVSFEFHAV ASKTSLVNPS  360
MLNRKPGEAL IVNFAFQLHH MPDESVSTVN ERDQLLRMAK SLNPKLVTVV EQDVNTNTAP  420
FFPRFTEAYN YYSAVFDSLD VTLPRESQDR LNVEKQCLAR DIVNIVACEG EERIERYEVA  480
GKWRARMMMA GFISCSITPN VVDMIRILIK EYCDRYMLKQ EAGALHFGWE DKSLIVASAW  540
K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-6317754025378Protein SCARECROW
5b3h_A2e-6317754024377Protein SCARECROW
5b3h_D2e-6317754024377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0267s0240.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164550.0AC216455.1 Populus trichocarpa clone POP032-C02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002302201.20.0scarecrow-like protein 1
RefseqXP_024450876.10.0scarecrow-like protein 1
RefseqXP_024450877.10.0scarecrow-like protein 1
SwissprotQ9SDQ30.0SCL1_ARATH; Scarecrow-like protein 1
TrEMBLA0A2K2BEX10.0A0A2K2BEX1_POPTR; Uncharacterized protein
STRINGPOPTR_0002s07430.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21450.10.0SCARECROW-like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]