PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0266s0300.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | WOX | ||||||||
Protein Properties | Length: 218aa MW: 24743.8 Da PI: 5.3728 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.5 | 1.5e-20 | 77 | 137 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++ qle+Le+ F++ n +p ++++ +++k+l +++e++V++WFqNrRa+ k+ SapurV1A.0266s0300.1.p 77 RQRWTPKPAQLEILEQIFKQcNATPGRQKINDITKELaqhgQISETNVYNWFQNRRARSKR 137 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 95.6 | 4.1e-31 | 76 | 139 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+p Q++iLe+++k+ tP +++i++it+eL+++G+i+++NV++WFQNr+aR+++kq SapurV1A.0266s0300.1.p 76 SRQRWTPKPAQLEILEQIFKQCNATPGRQKINDITKELAQHGQISETNVYNWFQNRRARSKRKQ 139 589***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.8E-17 | 69 | 140 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.6E-17 | 70 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 14.625 | 73 | 138 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.1E-13 | 75 | 142 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 3.5E-18 | 77 | 137 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.76E-14 | 77 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MEDGKFQNGG GLGVKVMTDE QMEMLRKQIS VYATICEQLV EMHKALSAQQ DFAGMRLGNP 60 YFCDPLLSSS VHKIGSRQRW TPKPAQLEIL EQIFKQCNAT PGRQKINDIT KELAQHGQIS 120 ETNVYNWFQN RRARSKRKQS AILPNSGESE VETEIESFKE KKTKPEDSQP DEEDATPVSD 180 HMHFHSPDIG IDQFVGKMES PGSCIPYWQM EQYDLFG* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 130 | 138 | RRARSKRKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0266s0300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF982713 | 0.0 | KF982713.1 Populus tomentosa WOX13b (WOX13b) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011041212.1 | 1e-156 | PREDICTED: WUSCHEL-related homeobox 8-like | ||||
Swissprot | Q5QMM3 | 6e-69 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | A0A1L6K4D4 | 1e-155 | A0A1L6K4D4_POPTO; WUSCHEL-related homeobox 13 | ||||
STRING | POPTR_0005s27410.1 | 1e-154 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 4e-65 | WUSCHEL related homeobox 13 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0266s0300.1.p |
Publications ? help Back to Top | |||
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