PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0263s0160.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | Trihelix | ||||||||
Protein Properties | Length: 359aa MW: 41876.5 Da PI: 4.9502 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 31.5 | 4.7e-10 | 39 | 119 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +Wt +e l L++ +e++ ++ + ++W+ + +++ + r+ +qC+ kw++l ++y ik+++k+ +s+s ++ +l SapurV1A.0263s0160.2.p 39 EWTTKEALILVNEIAAVEKDCLKALSTYQKWKIIVDNCVVLDVARNLNQCRTKWNSLLNEYNLIKDWDKESESRS----DFYWSL 119 5********************************************************************964433....466666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 1.0E-8 | 38 | 120 | No hit | No description |
PROSITE profile | PS50090 | 6.771 | 40 | 96 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 359 aa Download sequence Send to blast |
MEVIVNKKKL RKEQRENKNN NKLRGSSSTP RTRSQLSPEW TTKEALILVN EIAAVEKDCL 60 KALSTYQKWK IIVDNCVVLD VARNLNQCRT KWNSLLNEYN LIKDWDKESE SRSDFYWSLE 120 SERRKEFGLP ENFNEELFRA IDDYMWCHKE HPDTDPDPDP DTDPEKPDLL HAITNLGAKK 180 QRWRSKSLKT WKEEKTHKCC GEDNSQTIHA EEKPQVRCVE ENSQIYCIVE KPEGVCAEEE 240 HQVSQVQEST QTYYAEGKLQ TILAEEDPQE SCAEEEPHTI HAEEEPGESP AEEHPQPFCS 300 KEKPRTIHLE EETQERCLEE NHQTCCANEK PQSVPAETQL QESHVLERPQ KRHRKEKS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0263s0160.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147466 | 0.0 | EF147466.1 Populus trichocarpa clone WS01231_H23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011006656.1 | 0.0 | PREDICTED: uncharacterized protein LOC105112613 isoform X1 | ||||
TrEMBL | A0A2K2A9F8 | 0.0 | A0A2K2A9F8_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s29340.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 2e-42 | sequence-specific DNA binding transcription factors |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0263s0160.2.p |