PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0262s0270.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 397aa    MW: 43101.9 Da    PI: 6.6691
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0262s0270.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.81e-175095147
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                            +g+W++eEd  l ++v ++G ++W++Iar ++ gR++k+c++rw + 
  SapurV1A.0262s0270.1.p 50 KGPWSPEEDAVLSQLVSKFGARNWSLIARGIP-GRSGKSCRLRWCNQ 95
                            79******************************.***********985 PP
2Myb_DNA-binding55.31.5e-17102146147
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             r+++T eEd +++ a++++G++ W+ Iar +  gRt++++k++w++ 
  SapurV1A.0262s0270.1.p 102 RKPFTDEEDRIIIAAHAKHGNK-WAVIARLLT-GRTDNSIKNHWNST 146
                             789*******************.********9.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.88745100IPR017930Myb domain
SuperFamilySSF466896.83E-3147143IPR009057Homeodomain-like
SMARTSM007173.2E-154998IPR001005SANT/Myb domain
PfamPF002497.2E-175095IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2651103IPR009057Homeodomain-like
CDDcd001671.27E-145294No hitNo description
PROSITE profilePS5129421.347101151IPR017930Myb domain
SMARTSM007177.5E-17101149IPR001005SANT/Myb domain
PfamPF002493.7E-15102146IPR001005SANT/Myb domain
CDDcd001671.01E-12104147No hitNo description
Gene3DG3DSA:1.10.10.602.1E-23104150IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MQNQTENNNN AMRLTERERE NQVGSPTGGD GEAESGEPGG GSGGTNGKVK GPWSPEEDAV  60
LSQLVSKFGA RNWSLIARGI PGRSGKSCRL RWCNQLDPCL KRKPFTDEED RIIIAAHAKH  120
GNKWAVIARL LTGRTDNSIK NHWNSTLRRR WADLVSNERT RASSEETLSV CDVNSSLPME  180
VRDVTMDDQP SQHEDKAQTD NVLQTNEVNF ASEPNGNPTL PRPVARVSAF KVYNPPNDPK  240
LGSGLTRTIP THGYLVQTPK PDSGSCRFLE DVHCEPNVPS RCGYGCCATP SGGHPPSSLL  300
GPEFVEYDEP APFSSQELIS IATDLNNIAW IKSGLENSST GIPSNAVSYR MSHGTPVGSQ  360
TGMSEQNLRN GHMHFEEGRK KLMGTMAGII SAQMPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-37491503104C-Myb DNA-Binding Domain
1msf_C3e-37491503104C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0262s0270.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by salicylic acid. {ECO:0000269|PubMed:16463103}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2784400.0GU278440.1 Populus balsamifera isolate FBK13 haplotype A myb family transcription factor 109 gene, partial sequence.
GenBankGU2784420.0GU278442.1 Populus balsamifera isolate INU03 haplotype A myb family transcription factor 109 gene, partial sequence.
GenBankGU2784440.0GU278444.1 Populus balsamifera isolate HAY07 haplotype A myb family transcription factor 109 gene, partial sequence.
GenBankGU2784530.0GU278453.1 Populus balsamifera isolate LOV02 haplotype B myb family transcription factor 109 gene, partial sequence.
GenBankGU2784550.0GU278455.1 Populus balsamifera isolate RNA13 haplotype B myb family transcription factor 109 gene, partial sequence.
GenBankGU2784570.0GU278457.1 Populus balsamifera isolate WHR03 haplotype B myb family transcription factor 109 gene, partial sequence.
GenBankGU2784610.0GU278461.1 Populus balsamifera isolate GAL12 haplotype B myb family transcription factor 109 gene, partial sequence.
GenBankGU2784630.0GU278463.1 Populus balsamifera isolate STO11 haplotype B myb family transcription factor 109 gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036027.10.0PREDICTED: transcription factor MYB76-like
SwissprotQ425752e-81MYB1_ARATH; Transcription factor MYB1
TrEMBLA0A2K1YWX00.0A0A2K1YWX0_POPTR; Uncharacterized protein
STRINGPOPTR_0010s20220.10.0(Populus trichocarpa)
STRINGcassava4.1_008330m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39863362
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55730.11e-107myb domain protein 109
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Nguyen HT, et al.
    A Transcription Factor γMYB1 Binds to the P1BS cis-Element and Activates PLA2-γ Expression with its Co-Activator γMYB2.
    Plant Cell Physiol., 2016. 57(4): p. 784-97
    [PMID:26872838]
  3. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  4. Verma N,Burma PK
    Regulation of tapetum-specific A9 promoter by transcription factors AtMYB80, AtMYB1 and AtMYB4 in Arabidopsis thaliana and Nicotiana tabacum.
    Plant J., 2017. 92(3): p. 481-494
    [PMID:28849604]