PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0261s0120.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | GRAS | ||||||||
Protein Properties | Length: 588aa MW: 65860.5 Da PI: 4.5128 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 440.6 | 1.1e-134 | 218 | 587 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevs 88 ++lL+ecA+a+s+g+ e+a al+++l++l+s +gdp qR+aay++e+Laar+a+s+ lyk+l+++e + s+++laa++++ e++ SapurV1A.0261s0120.4.p 218 RRLLFECANAISEGNIEKALALINELRQLVSIQGDPPQRIAAYMVEGLAARMAESGIYLYKSLKCKEPP---SDDRLAAMQILLEIC 301 689*****************************************************************9...9************** PP GRAS 89 PilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelg 173 P++kf++++aN a+ ea++ge+rvHiiDfdi+qG Q+++L+q+La++p++ p+lR+Tgv++pes+ s l+ +g+rL+k+Aeel+ SapurV1A.0261s0120.4.p 302 PCFKFGFIAANGAMIEAFKGERRVHIIDFDINQGSQYITLIQTLANQPGKLPNLRLTGVDDPESVqrSVGGLRIIGQRLEKLAEELK 388 ***************************************************************9989999***************** PP GRAS 174 vpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea 260 vpfef++ va++++ +++++L++kpgEal+Vn+++qlh+++desvs+ +erd++L++ ksl+Pk+v+vveq++++n+++F+ rf+e SapurV1A.0261s0120.4.p 389 VPFEFHA-VASKTSVVSPSMLNCKPGEALIVNFAYQLHHMPDESVSTVNERDQLLRMAKSLNPKLVTVVEQDVNTNTAPFFPRFTEV 474 *******.7****************************************************************************** PP GRAS 261 leyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksd 347 +yysa+fdsl+a+lpr s++r +vE+++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ ++s ++++ ++ l++++ ++ SapurV1A.0261s0120.4.p 475 YNYYSAVFDSLDATLPRVSQDRLNVEKQCLARDIVNIVACEGEERIERYEVAGKWRARMMMAGFTSCSISPSVVDLIRKLIKQYCDR 561 *************************************************************************************66 PP GRAS 348 gyrveeesgslvlgWkdrpLvsvSaWr 374 y+++ee g+l++gW+d++Lv++SaW+ SapurV1A.0261s0120.4.p 562 -YMLKEEVGALLFGWEDKSLVVASAWK 587 .*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 66.057 | 191 | 568 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 4.0E-132 | 218 | 587 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 588 aa Download sequence Send to blast |
MSLVGSAELS ARAYESHELY PLMGSNDNSG LSAQMFGPDI RQNMYMTDSY SCESYEKYFL 60 DSPTEEIMQP SSSGISGNSA HPQEASSYQP RKSSGSTMFP QYPYSASFNL TTPCDGYQFI 120 SESDYLDIES PDQLDYDEYK MKLKLRELER ALLEDNEEDE EDVMFGNSQS MEMDAEWSDP 180 IQSEMLHGSP KETSSSDSNL SSISSNKEVS QLSARTPRRL LFECANAISE GNIEKALALI 240 NELRQLVSIQ GDPPQRIAAY MVEGLAARMA ESGIYLYKSL KCKEPPSDDR LAAMQILLEI 300 CPCFKFGFIA ANGAMIEAFK GERRVHIIDF DINQGSQYIT LIQTLANQPG KLPNLRLTGV 360 DDPESVQRSV GGLRIIGQRL EKLAEELKVP FEFHAVASKT SVVSPSMLNC KPGEALIVNF 420 AYQLHHMPDE SVSTVNERDQ LLRMAKSLNP KLVTVVEQDV NTNTAPFFPR FTEVYNYYSA 480 VFDSLDATLP RVSQDRLNVE KQCLARDIVN IVACEGEERI ERYEVAGKWR ARMMMAGFTS 540 CSISPSVVDL IRKLIKQYCD RYMLKEEVGA LLFGWEDKSL VVASAWK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 1e-64 | 223 | 586 | 25 | 378 | Protein SCARECROW |
5b3h_A | 1e-64 | 223 | 586 | 24 | 377 | Protein SCARECROW |
5b3h_D | 1e-64 | 223 | 586 | 24 | 377 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0261s0120.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216455 | 0.0 | AC216455.1 Populus trichocarpa clone POP032-C02, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002306674.3 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_024457342.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_024457343.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_024457344.1 | 0.0 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | A0A2K2AIQ0 | 0.0 | A0A2K2AIQ0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0005s20890.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0261s0120.4.p |
Publications ? help Back to Top | |||
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