PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | SapurV1A.0260s0250.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
|
||||||||
Family | GRF | ||||||||
Protein Properties | Length: 144aa MW: 16076.7 Da PI: 10.1351 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 59 | 8e-19 | 111 | 143 | 1 | 33 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlh 33 ++epgrCrRtDGKkWRCs++vl+ +k+C++H+h SapurV1A.0260s0250.2.p 111 EPEPGRCRRTDGKKWRCSKEVLPCQKYCDKHIH 143 69*****************************98 PP | |||||||
2 | QLQ | 25.9 | 3.1e-10 | 40 | 72 | 3 | 35 |
QLQ 3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqai 35 FT Qlq+L Q l+yKy+ + PvP +L+++i SapurV1A.0260s0250.2.p 40 FTILQLQELQLQSLIYKYIQVKSPVPYHLVLPI 72 7888****************************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51666 | 15.9 | 39 | 74 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 4.6E-8 | 40 | 72 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 20.392 | 111 | 143 | IPR014977 | WRC domain |
Pfam | PF08879 | 3.0E-15 | 112 | 143 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 144 aa Download sequence Send to blast |
MEGNRRNGRS RSPPIGLGAE LGLGGSSQRS RTGCKITYGF TILQLQELQL QSLIYKYIQV 60 KSPVPYHLVL PILKSVATSL GALSSGLYQL YPSLMGSKCN PLHLEYKNRT EPEPGRCRRT 120 DGKKWRCSKE VLPCQKYCDK HIH* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of cell proliferation in developing shoots and leaves (PubMed:24854713). Does not possess transactivation activity (PubMed:24854713). {ECO:0000269|PubMed:24854713}. | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | SapurV1A.0260s0250.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002298083.2 | 1e-78 | growth-regulating factor 10 | ||||
Swissprot | A5HEG9 | 1e-32 | GRF10_MAIZE; GRF-interacting factor 10 | ||||
Swissprot | Q6AWX7 | 9e-33 | GRF12_ORYSJ; Growth-regulating factor 12 | ||||
TrEMBL | A0A2K2BVZ3 | 2e-77 | A0A2K2BVZ3_POPTR; Uncharacterized protein | ||||
TrEMBL | B9GKS4 | 3e-77 | B9GKS4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0001s08310.1 | 5e-78 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G13960.1 | 1e-19 | growth-regulating factor 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | SapurV1A.0260s0250.2.p |
Publications ? help Back to Top | |||
---|---|---|---|
|