PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0258s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | NF-YA | ||||||||
Protein Properties | Length: 214aa MW: 23537.7 Da PI: 9.7987 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 96.5 | 2.9e-30 | 85 | 140 | 2 | 58 |
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p+YVNaKQy++I++RR++Rak+ ekkl ++srkpy+h SRh hA+rRpRg+gGrF SapurV1A.0258s0010.1.p 85 GPMYVNAKQYHGIMRRRKSRAKAVLEKKL-TNSRKPYMHYSRHLHAMRRPRGCGGRF 140 79***************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.7E-33 | 82 | 143 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.433 | 83 | 143 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 4.9E-26 | 86 | 140 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.7E-22 | 86 | 108 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 8.7E-22 | 117 | 140 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MLTNQVISHS GDYKTSADGQ KTLQAAISLQ TTLPEYRAHF DLEFGQPVIC TKYPRVDQCY 60 GVFSSFGPQI SGRIMLPMSM TADDGPMYVN AKQYHGIMRR RKSRAKAVLE KKLTNSRKPY 120 MHYSRHLHAM RRPRGCGGRF LNTKELNGGK GTMEAKKAGD FELSQATGSQ NSEVLESGGA 180 TLNSSMEANG GGSILSGSEV TSMYNRGELD LLQI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4g91_A | 9e-18 | 84 | 145 | 2 | 64 | HAPB protein |
4g92_A | 9e-18 | 84 | 145 | 2 | 64 | HAPB protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 97 | 102 | MRRRKS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0258s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC210132 | 5e-84 | AC210132.1 Populus trichocarpa clone POP011-D09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002322774.2 | 1e-137 | nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_002322775.2 | 1e-137 | nuclear transcription factor Y subunit A-10 | ||||
Swissprot | Q8LFU0 | 5e-50 | NFYAA_ARATH; Nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | B9IIJ3 | 1e-136 | B9IIJ3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0016s06860.3 | 1e-136 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3794 | 34 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 1e-52 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0258s0010.1.p |
Publications ? help Back to Top | |||
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