PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0257s0010.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | CO-like | ||||||||
Protein Properties | Length: 426aa MW: 48078.8 Da PI: 5.1222 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 28.3 | 3.5e-09 | 16 | 59 | 3 | 39 |
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39 +r C+ + +k++++fC ++ +lC+ C + H+ H+v SapurV1A.0257s0010.1.p 16 ARACDSCLRKRARWFCVADDAFLCQACDASVHSAnqlasrhHRV 59 578*****************************667888885655 PP | |||||||
2 | CCT | 70 | 5.8e-24 | 368 | 411 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea+++RYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a SapurV1A.0257s0010.1.p 368 REARVMRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 411 9*****************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00336 | 1.3E-10 | 14 | 61 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 10.694 | 14 | 61 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 1.6E-7 | 16 | 58 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.27E-11 | 17 | 61 | No hit | No description |
Pfam | PF06203 | 2.2E-18 | 368 | 410 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 16.112 | 368 | 410 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 426 aa Download sequence Send to blast |
MIAGRKAENA MGGRTARACD SCLRKRARWF CVADDAFLCQ ACDASVHSAN QLASRHHRVR 60 LETASSSYRI SGSLDPDQDY SPPAWHQGFT RKARTPRHNS NKSLLVQQLL KDDREKVFNP 120 LPLVPEIGSE EEANRVADGS EDDQFLCRVP VFDPFAATLC DTVTAGEVYG QEGTCDLDSL 180 PGFLPSDIDL AEFAADVENM LGREADKEYH DTKDSGLLDC SKEEDEGQFC FSDKVVKIKD 240 EQEMEAVIDC HFDQDFNMAR ESLLDWNFDY EKLVDGDEEV EEKKLPVPET VMMNSTGYKE 300 MKRNVSLRLD YESVIIAWAN QGCPWTTGSR PELNPDDSWT DSMGACPKDG SNPYGGLGSH 360 TRGGDGEREA RVMRYKEKRR TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR ASLMGTADFP 420 LKKQY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 378 | 394 | RRTRLFSKKIRYEVRKL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0257s0010.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213017 | 0.0 | AC213017.1 Populus trichocarpa clone POP051-F14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006374368.2 | 0.0 | zinc finger protein CONSTANS-LIKE 6 | ||||
TrEMBL | A0A2K1XIE4 | 0.0 | A0A2K1XIE4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s06480.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1473 | 33 | 92 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G25440.1 | 1e-85 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0257s0010.1.p |