PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0254s0190.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 92aa    MW: 10678.8 Da    PI: 5.2574
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0254s0190.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.26e-111155244
                            SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                             +WT+e ++l+ +a +++ ++   +W+tIa+ +g   t++++k r+
  SapurV1A.0254s0190.1.p 11 SNWTAEQHKLFENALAKYDKDtadRWRTIAKLVG-ETTEEEVKWRY 55
                            58********************************.89***999776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007179.0E-6961IPR001005SANT/Myb domain
PROSITE profilePS500906.6321159IPR017877Myb-like domain
SuperFamilySSF466891.35E-111166IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-51259IPR009057Homeodomain-like
CDDcd001671.66E-51255No hitNo description
PfamPF002495.0E-81255IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MKSSSFRQPS SNWTAEQHKL FENALAKYDK DTADRWRTIA KLVGETTEEE VKWRYDILLE  60
DLKSIESDKV PLPNYKNEGS RRGNISSEEE R*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-24491286RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0254s0190.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025785.13e-41PREDICTED: protein RADIALIS-like 4
RefseqXP_011025786.13e-41PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1736e-25RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A2K1ZN831e-39A0A2K1ZN83_POPTR; Uncharacterized protein
STRINGPOPTR_0007s12860.12e-40(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.23e-27RAD-like 6