PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0252s0390.4.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 527aa MW: 57948.9 Da PI: 5.8738 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 107.8 | 6e-34 | 300 | 354 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+ SapurV1A.0252s0390.4.p 300 KPRMRWTPELHEAFVEAVNNLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 354 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.814 | 297 | 357 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.24E-18 | 298 | 354 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.9E-31 | 299 | 356 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.5E-24 | 300 | 354 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.5E-9 | 302 | 353 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.2E-23 | 385 | 432 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0055063 | Biological Process | sulfate ion homeostasis | ||||
GO:0071486 | Biological Process | cellular response to high light intensity | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
MEARPAFSIQ RSGAKQLGNL GVSGHSGVLS SSLPLVPTPL EETCPKLPGS QQVSMERELM 60 TRPLVHASHL PYNNEVVGHL FSSSAGFSTD LQYSSVTPRE KHSRNTPFIS QSSANTASLL 120 MSQSSSQALL QSTTSSHYIN ENSASWCPEP LPGFLDFPTN TTIQNNQIES NSCAGVMASE 180 EFGKRNDWQE WADQLITDDD ALATNWNELL ADTSVADMEP KVGIFSQHTT NKIPLQQLVK 240 YYFMLSPVLI SLLQMAYQVS KPSSNIPVQH SQVHPQLPSP SAEIRPVLTP TSSANSAPTK 300 PRMRWTPELH EAFVEAVNNL GGSERATPKG VLKLMKVEGL TIYHVKSHLQ KYRTARYKPE 360 SSEGSSEKRL TSIDEISSLD LKTGIEITEA LQLQMEVQKR LHEQLEIQRN LQLRIEEQGR 420 HLQMMFEKQC KSGIDVVKAA SSALENPSTL SSDAIQDAPA KTELETAQVD CGKTPTDTIF 480 ASPALEEGSQ DLNRKHKVSQ TETPENSEPY NTDSSLQPAK RSRADA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 8e-32 | 300 | 358 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 8e-32 | 300 | 358 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 8e-32 | 300 | 358 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 8e-32 | 300 | 358 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 8e-32 | 300 | 358 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 8e-32 | 300 | 358 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 8e-32 | 300 | 358 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 8e-32 | 300 | 358 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0252s0390.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC211305 | 0.0 | AC211305.1 Populus trichocarpa clone POP004-I01, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002301855.3 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X3 | ||||
Refseq | XP_006386913.2 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X3 | ||||
Refseq | XP_024451487.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X3 | ||||
Refseq | XP_024451488.1 | 0.0 | protein PHOSPHATE STARVATION RESPONSE 1 isoform X3 | ||||
TrEMBL | A0A2K2BPR4 | 0.0 | A0A2K2BPR4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0002s25960.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G28610.1 | 1e-104 | phosphate starvation response 1 |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0252s0390.4.p |