PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0252s0390.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family G2-like
Protein Properties Length: 527aa    MW: 57948.9 Da    PI: 5.8738
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0252s0390.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like107.86e-34300354155
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                             kpr+rWtpeLHe+Fveav++LGGse+AtPk +l+lmkv+gLt++hvkSHLQkYR+
  SapurV1A.0252s0390.2.p 300 KPRMRWTPELHEAFVEAVNNLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRT 354
                             79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.814297357IPR017930Myb domain
SuperFamilySSF466898.24E-18298354IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.9E-31299356IPR009057Homeodomain-like
TIGRFAMsTIGR015571.5E-24300354IPR006447Myb domain, plants
PfamPF002491.5E-9302353IPR001005SANT/Myb domain
PfamPF143791.2E-23385432IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0016036Biological Processcellular response to phosphate starvation
GO:0055063Biological Processsulfate ion homeostasis
GO:0071486Biological Processcellular response to high light intensity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
MEARPAFSIQ RSGAKQLGNL GVSGHSGVLS SSLPLVPTPL EETCPKLPGS QQVSMERELM  60
TRPLVHASHL PYNNEVVGHL FSSSAGFSTD LQYSSVTPRE KHSRNTPFIS QSSANTASLL  120
MSQSSSQALL QSTTSSHYIN ENSASWCPEP LPGFLDFPTN TTIQNNQIES NSCAGVMASE  180
EFGKRNDWQE WADQLITDDD ALATNWNELL ADTSVADMEP KVGIFSQHTT NKIPLQQLVK  240
YYFMLSPVLI SLLQMAYQVS KPSSNIPVQH SQVHPQLPSP SAEIRPVLTP TSSANSAPTK  300
PRMRWTPELH EAFVEAVNNL GGSERATPKG VLKLMKVEGL TIYHVKSHLQ KYRTARYKPE  360
SSEGSSEKRL TSIDEISSLD LKTGIEITEA LQLQMEVQKR LHEQLEIQRN LQLRIEEQGR  420
HLQMMFEKQC KSGIDVVKAA SSALENPSTL SSDAIQDAPA KTELETAQVD CGKTPTDTIF  480
ASPALEEGSQ DLNRKHKVSQ TETPENSEPY NTDSSLQPAK RSRADA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A8e-32300358260Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B8e-32300358260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A8e-32300358260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C8e-32300358260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D8e-32300358260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F8e-32300358260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H8e-32300358260Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J8e-32300358260Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0252s0390.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2113050.0AC211305.1 Populus trichocarpa clone POP004-I01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002301855.30.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X3
RefseqXP_006386913.20.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X3
RefseqXP_024451487.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X3
RefseqXP_024451488.10.0protein PHOSPHATE STARVATION RESPONSE 1 isoform X3
TrEMBLA0A2K2BPR40.0A0A2K2BPR4_POPTR; Uncharacterized protein
STRINGPOPTR_0002s25960.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28610.11e-104phosphate starvation response 1