PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | SapurV1A.0251s0040.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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Family | G2-like | ||||||||
Protein Properties | Length: 311aa MW: 34660.4 Da PI: 8.2852 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 102.3 | 3e-32 | 235 | 289 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG++kAtPk+il+lm+ +gLt+ hvkSHLQkYR+ SapurV1A.0251s0040.2.p 235 KTRIRWTQDLHEKFVECVNRLGGADKATPKAILKLMDSDGLTIFHVKSHLQKYRI 289 68****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.796 | 232 | 292 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.56E-17 | 233 | 289 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.3E-28 | 234 | 290 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.3E-23 | 235 | 290 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.0E-8 | 239 | 288 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 311 aa Download sequence Send to blast |
MNTRNIDSEE RVHRNDGVMI GDFVNLSSEY FGNQQIRNMT PRLPPAVMEA GCQQQNFIPE 60 RSSNSIMSRF ESPASAFYAT ERCMRFPQYD FQVGSSFCSQ YSKSYDSHPS SGPNYSIDIG 120 EQSDHSFGLN SILESVSKPH FSYFNSFDNS DKGLGSSSGN KLPSQHHNKF LDSHGVSLGN 180 RFSVPFQGNQ DRQVRCSPYN SPFAGLSFNS REGKQSPGFS LGGGPTSSGK DLPSKTRIRW 240 TQDLHEKFVE CVNRLGGADK ATPKAILKLM DSDGLTIFHV KSHLQKYRIA KYMPDPSEVA 300 FKSERHCNCN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-23 | 235 | 292 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-23 | 235 | 292 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 1e-23 | 235 | 292 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 1e-23 | 235 | 292 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 1e-23 | 235 | 292 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 1e-23 | 235 | 292 | 1 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-23 | 235 | 292 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-23 | 235 | 292 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-23 | 235 | 292 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-23 | 235 | 292 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-23 | 235 | 292 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-23 | 235 | 292 | 2 | 59 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | SapurV1A.0251s0040.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147970 | 0.0 | EF147970.1 Populus trichocarpa clone WS0126_F15 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002308371.3 | 0.0 | myb family transcription factor PHL5 | ||||
TrEMBL | A0A2K2A4J3 | 0.0 | A0A2K2A4J3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0006s20540.1 | 0.0 | (Populus trichocarpa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.2 | 2e-42 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | SapurV1A.0251s0040.2.p |